Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27613 | 5' | -55.6 | NC_005882.1 | + | 30502 | 1.12 | 0.00038 |
Target: 5'- gGUCGCGCGAUCGUACUCGAGCACCGCg -3' miRNA: 3'- -CAGCGCGCUAGCAUGAGCUCGUGGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 29936 | 0.77 | 0.138915 |
Target: 5'- aGUCGCGCGAcaUCGU-CUCGAuCGCgGCg -3' miRNA: 3'- -CAGCGCGCU--AGCAuGAGCUcGUGgCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 13901 | 0.75 | 0.173756 |
Target: 5'- aGUCG-GCGAUCcaucgGUACgggcagcguaUCGAGCGCCGCu -3' miRNA: 3'- -CAGCgCGCUAG-----CAUG----------AGCUCGUGGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 13299 | 0.75 | 0.178623 |
Target: 5'- -cCG-GCuGAUC-UGCUCGAGCACCGCc -3' miRNA: 3'- caGCgCG-CUAGcAUGAGCUCGUGGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 30456 | 0.75 | 0.187688 |
Target: 5'- aUCGCGCGAcccacacgcugaCGUGCUCGGGCaugcagACCGUg -3' miRNA: 3'- cAGCGCGCUa-----------GCAUGAGCUCG------UGGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 27165 | 0.74 | 0.210426 |
Target: 5'- -gCGCGCGGUgcucugGCUCGGGCGCgCGCu -3' miRNA: 3'- caGCGCGCUAgca---UGAGCUCGUG-GCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 18639 | 0.73 | 0.234249 |
Target: 5'- aGUgGCGCagGAUCGUG-UUGAGCACCGg -3' miRNA: 3'- -CAgCGCG--CUAGCAUgAGCUCGUGGCg -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 25341 | 0.73 | 0.240549 |
Target: 5'- aUCgGCGCGA-CGcUACUCGguagcuucGGCGCCGCg -3' miRNA: 3'- cAG-CGCGCUaGC-AUGAGC--------UCGUGGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 32121 | 0.73 | 0.240549 |
Target: 5'- -cUGCGCGAUCGUugUguCG-GCGCCGg -3' miRNA: 3'- caGCGCGCUAGCAugA--GCuCGUGGCg -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 25116 | 0.73 | 0.246989 |
Target: 5'- aUCGUGUGGcuuugCGgccgGCUCGGGCGCCGg -3' miRNA: 3'- cAGCGCGCUa----GCa---UGAGCUCGUGGCg -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 21996 | 0.72 | 0.281348 |
Target: 5'- -cCGuCGCGAUCGUGCUgCGccAGCucaacgGCCGCg -3' miRNA: 3'- caGC-GCGCUAGCAUGA-GC--UCG------UGGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 22571 | 0.72 | 0.281348 |
Target: 5'- aGUCgGCgGUGAUCG-GCUUGAucgGCACCGCa -3' miRNA: 3'- -CAG-CG-CGCUAGCaUGAGCU---CGUGGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 4789 | 0.72 | 0.288659 |
Target: 5'- cUCGaCGCGAUCGUcGC-CGAGCuuaccggcCCGCg -3' miRNA: 3'- cAGC-GCGCUAGCA-UGaGCUCGu-------GGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 27779 | 0.72 | 0.293865 |
Target: 5'- cGUUGCGCGAccuggagcgcaugcUCGacgaccUGCUcgcgaagcgCGAGCGCCGCg -3' miRNA: 3'- -CAGCGCGCU--------------AGC------AUGA---------GCUCGUGGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 7544 | 0.71 | 0.311486 |
Target: 5'- gGUUGCuGCGAcuUCGUGCUCGGcGCACUccagGCc -3' miRNA: 3'- -CAGCG-CGCU--AGCAUGAGCU-CGUGG----CG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 36674 | 0.71 | 0.311486 |
Target: 5'- aUCGCGCGucgaCGUGCU-GAaauaucGCGCCGCg -3' miRNA: 3'- cAGCGCGCua--GCAUGAgCU------CGUGGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 26048 | 0.7 | 0.36997 |
Target: 5'- -cCGCGCGGUUGaacgcCUCcuucAGCGCCGCg -3' miRNA: 3'- caGCGCGCUAGCau---GAGc---UCGUGGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 11914 | 0.7 | 0.36997 |
Target: 5'- uGUCGuCGCGu---UGCUCG-GCGCCGCc -3' miRNA: 3'- -CAGC-GCGCuagcAUGAGCuCGUGGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 1068 | 0.7 | 0.378914 |
Target: 5'- --aGCGCGGUagcUGUcaUCGGGCAUCGCa -3' miRNA: 3'- cagCGCGCUA---GCAugAGCUCGUGGCG- -5' |
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27613 | 5' | -55.6 | NC_005882.1 | + | 27229 | 0.7 | 0.388003 |
Target: 5'- -gCGCGCGccCGaGC-CaGAGCACCGCg -3' miRNA: 3'- caGCGCGCuaGCaUGaG-CUCGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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