miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27613 5' -55.6 NC_005882.1 + 1068 0.7 0.378914
Target:  5'- --aGCGCGGUagcUGUcaUCGGGCAUCGCa -3'
miRNA:   3'- cagCGCGCUA---GCAugAGCUCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 3379 0.67 0.528758
Target:  5'- -gCGCGCGggCGcUGCgcggccUGGGCuACCGCg -3'
miRNA:   3'- caGCGCGCuaGC-AUGa-----GCUCG-UGGCG- -5'
27613 5' -55.6 NC_005882.1 + 3581 0.66 0.610448
Target:  5'- cGUCGCGUGcuggucAUCGUGagcCGAGUgcgcagcgcgucgacGCCGCu -3'
miRNA:   3'- -CAGCGCGC------UAGCAUga-GCUCG---------------UGGCG- -5'
27613 5' -55.6 NC_005882.1 + 3622 0.66 0.594799
Target:  5'- -gCGaCGCGAUCGUGC-CGAaacgguGuCGCUGCu -3'
miRNA:   3'- caGC-GCGCUAGCAUGaGCU------C-GUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 4789 0.72 0.288659
Target:  5'- cUCGaCGCGAUCGUcGC-CGAGCuuaccggcCCGCg -3'
miRNA:   3'- cAGC-GCGCUAGCA-UGaGCUCGu-------GGCG- -5'
27613 5' -55.6 NC_005882.1 + 4932 0.7 0.388003
Target:  5'- -cCGCGCG-UCGaACUC--GCGCCGCu -3'
miRNA:   3'- caGCGCGCuAGCaUGAGcuCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 5822 0.68 0.45244
Target:  5'- cUCGCGUGGUCGgagauUUCGuAGCuccacacacgaucgGCCGCg -3'
miRNA:   3'- cAGCGCGCUAGCau---GAGC-UCG--------------UGGCG- -5'
27613 5' -55.6 NC_005882.1 + 6640 0.68 0.475874
Target:  5'- cGUCGUGCGGcgcgcCGUGCgucucggCGuGCugCGCc -3'
miRNA:   3'- -CAGCGCGCUa----GCAUGa------GCuCGugGCG- -5'
27613 5' -55.6 NC_005882.1 + 7384 0.68 0.475874
Target:  5'- gGUCGuCGCGA-CGUugUUG-GUGCUGCu -3'
miRNA:   3'- -CAGC-GCGCUaGCAugAGCuCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 7479 0.67 0.528758
Target:  5'- -aCGCGCcagGAcUCGg---CGGGCACCGCc -3'
miRNA:   3'- caGCGCG---CU-AGCaugaGCUCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 7544 0.71 0.311486
Target:  5'- gGUUGCuGCGAcuUCGUGCUCGGcGCACUccagGCc -3'
miRNA:   3'- -CAGCG-CGCU--AGCAUGAGCU-CGUGG----CG- -5'
27613 5' -55.6 NC_005882.1 + 9565 0.67 0.561514
Target:  5'- --gGCGCG-UCGUGCUUGcGGcCGCCaGCg -3'
miRNA:   3'- cagCGCGCuAGCAUGAGC-UC-GUGG-CG- -5'
27613 5' -55.6 NC_005882.1 + 10789 0.66 0.625014
Target:  5'- gGUCGacgGCGGUCuacgggGUGCUUGAGCAgcaauacaaggcggUCGCg -3'
miRNA:   3'- -CAGCg--CGCUAG------CAUGAGCUCGU--------------GGCG- -5'
27613 5' -55.6 NC_005882.1 + 11840 0.66 0.588111
Target:  5'- -cCGCGCGGugaucguccucggcgUCGUAgUCG-GCGUCGCg -3'
miRNA:   3'- caGCGCGCU---------------AGCAUgAGCuCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 11914 0.7 0.36997
Target:  5'- uGUCGuCGCGu---UGCUCG-GCGCCGCc -3'
miRNA:   3'- -CAGC-GCGCuagcAUGAGCuCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 12203 0.66 0.583659
Target:  5'- uUCGUGCGcUCGUGCgguaCGAccgGCACCu- -3'
miRNA:   3'- cAGCGCGCuAGCAUGa---GCU---CGUGGcg -5'
27613 5' -55.6 NC_005882.1 + 12791 0.67 0.528758
Target:  5'- --gGCGaacaGGUCGccggCGAGCGCCGCc -3'
miRNA:   3'- cagCGCg---CUAGCaugaGCUCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 13299 0.75 0.178623
Target:  5'- -cCG-GCuGAUC-UGCUCGAGCACCGCc -3'
miRNA:   3'- caGCgCG-CUAGcAUGAGCUCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 13617 0.66 0.617168
Target:  5'- cUCGC-CGAUCGcgUGCUgGugaAGCugCGCa -3'
miRNA:   3'- cAGCGcGCUAGC--AUGAgC---UCGugGCG- -5'
27613 5' -55.6 NC_005882.1 + 13901 0.75 0.173756
Target:  5'- aGUCG-GCGAUCcaucgGUACgggcagcguaUCGAGCGCCGCu -3'
miRNA:   3'- -CAGCgCGCUAG-----CAUG----------AGCUCGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.