miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27613 5' -55.6 NC_005882.1 + 12203 0.66 0.583659
Target:  5'- uUCGUGCGcUCGUGCgguaCGAccgGCACCu- -3'
miRNA:   3'- cAGCGCGCuAGCAUGa---GCU---CGUGGcg -5'
27613 5' -55.6 NC_005882.1 + 5822 0.68 0.45244
Target:  5'- cUCGCGUGGUCGgagauUUCGuAGCuccacacacgaucgGCCGCg -3'
miRNA:   3'- cAGCGCGCUAGCau---GAGC-UCG--------------UGGCG- -5'
27613 5' -55.6 NC_005882.1 + 24465 0.68 0.46561
Target:  5'- -cUGCGCaGUCGUugUCGucuuGGC-CCGCu -3'
miRNA:   3'- caGCGCGcUAGCAugAGC----UCGuGGCG- -5'
27613 5' -55.6 NC_005882.1 + 6640 0.68 0.475874
Target:  5'- cGUCGUGCGGcgcgcCGUGCgucucggCGuGCugCGCc -3'
miRNA:   3'- -CAGCGCGCUa----GCAUGa------GCuCGugGCG- -5'
27613 5' -55.6 NC_005882.1 + 7384 0.68 0.475874
Target:  5'- gGUCGuCGCGA-CGUugUUG-GUGCUGCu -3'
miRNA:   3'- -CAGC-GCGCUaGCAugAGCuCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 18111 0.68 0.48625
Target:  5'- uUCGUGaauuuccaGAUCGacgACUCG-GCGCUGCg -3'
miRNA:   3'- cAGCGCg-------CUAGCa--UGAGCuCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 7479 0.67 0.528758
Target:  5'- -aCGCGCcagGAcUCGg---CGGGCACCGCc -3'
miRNA:   3'- caGCGCG---CU-AGCaugaGCUCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 22029 0.67 0.561514
Target:  5'- -nCG-GCGGUgccaucgaCGUGCUCGAucacguucGCACCGCc -3'
miRNA:   3'- caGCgCGCUA--------GCAUGAGCU--------CGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 15314 0.66 0.572562
Target:  5'- uUCGcCGCGugcCGUucauCgUCGAGCugCGCa -3'
miRNA:   3'- cAGC-GCGCua-GCAu---G-AGCUCGugGCG- -5'
27613 5' -55.6 NC_005882.1 + 1068 0.7 0.378914
Target:  5'- --aGCGCGGUagcUGUcaUCGGGCAUCGCa -3'
miRNA:   3'- cagCGCGCUA---GCAugAGCUCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 11914 0.7 0.36997
Target:  5'- uGUCGuCGCGu---UGCUCG-GCGCCGCc -3'
miRNA:   3'- -CAGC-GCGCuagcAUGAGCuCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 36674 0.71 0.311486
Target:  5'- aUCGCGCGucgaCGUGCU-GAaauaucGCGCCGCg -3'
miRNA:   3'- cAGCGCGCua--GCAUGAgCU------CGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 13901 0.75 0.173756
Target:  5'- aGUCG-GCGAUCcaucgGUACgggcagcguaUCGAGCGCCGCu -3'
miRNA:   3'- -CAGCgCGCUAG-----CAUG----------AGCUCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 30456 0.75 0.187688
Target:  5'- aUCGCGCGAcccacacgcugaCGUGCUCGGGCaugcagACCGUg -3'
miRNA:   3'- cAGCGCGCUa-----------GCAUGAGCUCG------UGGCG- -5'
27613 5' -55.6 NC_005882.1 + 27165 0.74 0.210426
Target:  5'- -gCGCGCGGUgcucugGCUCGGGCGCgCGCu -3'
miRNA:   3'- caGCGCGCUAgca---UGAGCUCGUG-GCG- -5'
27613 5' -55.6 NC_005882.1 + 25341 0.73 0.240549
Target:  5'- aUCgGCGCGA-CGcUACUCGguagcuucGGCGCCGCg -3'
miRNA:   3'- cAG-CGCGCUaGC-AUGAGC--------UCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 22571 0.72 0.281348
Target:  5'- aGUCgGCgGUGAUCG-GCUUGAucgGCACCGCa -3'
miRNA:   3'- -CAG-CG-CGCUAGCaUGAGCU---CGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 21996 0.72 0.281348
Target:  5'- -cCGuCGCGAUCGUGCUgCGccAGCucaacgGCCGCg -3'
miRNA:   3'- caGC-GCGCUAGCAUGA-GC--UCG------UGGCG- -5'
27613 5' -55.6 NC_005882.1 + 27779 0.72 0.293865
Target:  5'- cGUUGCGCGAccuggagcgcaugcUCGacgaccUGCUcgcgaagcgCGAGCGCCGCg -3'
miRNA:   3'- -CAGCGCGCU--------------AGC------AUGA---------GCUCGUGGCG- -5'
27613 5' -55.6 NC_005882.1 + 7544 0.71 0.311486
Target:  5'- gGUUGCuGCGAcuUCGUGCUCGGcGCACUccagGCc -3'
miRNA:   3'- -CAGCG-CGCU--AGCAUGAGCU-CGUGG----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.