miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27614 5' -61.2 NC_005882.1 + 23033 0.66 0.35291
Target:  5'- gUCCGcgUAGuCGUAGguCGCCuUgGCCGCCg -3'
miRNA:   3'- -GGGCa-GUC-GCGUC--GCGGuAgCGGCGG- -5'
27614 5' -61.2 NC_005882.1 + 27659 0.66 0.35291
Target:  5'- gCCG-CGGcCGCGGCcugCGUCGCCauGCCg -3'
miRNA:   3'- gGGCaGUC-GCGUCGcg-GUAGCGG--CGG- -5'
27614 5' -61.2 NC_005882.1 + 25758 0.66 0.35291
Target:  5'- uUCCGgaUCGGCGagacgauGCGCCGU-GCgGCCc -3'
miRNA:   3'- -GGGC--AGUCGCgu-----CGCGGUAgCGgCGG- -5'
27614 5' -61.2 NC_005882.1 + 12318 0.66 0.35291
Target:  5'- uCgCGaUCAGCGCgugacGGCuGCCggCGgCGCCg -3'
miRNA:   3'- -GgGC-AGUCGCG-----UCG-CGGuaGCgGCGG- -5'
27614 5' -61.2 NC_005882.1 + 11915 0.66 0.35291
Target:  5'- gUCGUC-GCGUugcucGGCGCCGccgCGCCcgugGCCg -3'
miRNA:   3'- gGGCAGuCGCG-----UCGCGGUa--GCGG----CGG- -5'
27614 5' -61.2 NC_005882.1 + 15668 0.66 0.344702
Target:  5'- -aCGaCGGCa-AGCGCCAcggcgaCGCCGCCg -3'
miRNA:   3'- ggGCaGUCGcgUCGCGGUa-----GCGGCGG- -5'
27614 5' -61.2 NC_005882.1 + 22649 0.66 0.344702
Target:  5'- -aCG-CGGCGCAGUucgGCCcgCaGCuCGCCg -3'
miRNA:   3'- ggGCaGUCGCGUCG---CGGuaG-CG-GCGG- -5'
27614 5' -61.2 NC_005882.1 + 20880 0.66 0.344702
Target:  5'- aCCUGcUCGGCGCGGaCGCCG--GCUaCCu -3'
miRNA:   3'- -GGGC-AGUCGCGUC-GCGGUagCGGcGG- -5'
27614 5' -61.2 NC_005882.1 + 18188 0.66 0.344702
Target:  5'- gCgCGU--GCGCAGCGCCgaGUCGUCGaUCu -3'
miRNA:   3'- -GgGCAguCGCGUCGCGG--UAGCGGC-GG- -5'
27614 5' -61.2 NC_005882.1 + 19466 0.66 0.344702
Target:  5'- gCUgGUCGGCGCAuCGUC-UUGUCGCg -3'
miRNA:   3'- -GGgCAGUCGCGUcGCGGuAGCGGCGg -5'
27614 5' -61.2 NC_005882.1 + 36576 0.66 0.343889
Target:  5'- uCCCGUaccugaaCGGUcuGC-GCGCUuUCGCCGCg -3'
miRNA:   3'- -GGGCA-------GUCG--CGuCGCGGuAGCGGCGg -5'
27614 5' -61.2 NC_005882.1 + 31723 0.66 0.343889
Target:  5'- gCCGUCcGCGCugaccuugguguuAGCGaCCGUcacgucgaCGUCGCCc -3'
miRNA:   3'- gGGCAGuCGCG-------------UCGC-GGUA--------GCGGCGG- -5'
27614 5' -61.2 NC_005882.1 + 28242 0.66 0.336632
Target:  5'- gCCGcCGGCcguaCAGC-CCAaggUGCCGCCg -3'
miRNA:   3'- gGGCaGUCGc---GUCGcGGUa--GCGGCGG- -5'
27614 5' -61.2 NC_005882.1 + 19186 0.66 0.336632
Target:  5'- -aCGUCGGguuccuCGguGCGCa---GCCGCCg -3'
miRNA:   3'- ggGCAGUC------GCguCGCGguagCGGCGG- -5'
27614 5' -61.2 NC_005882.1 + 28155 0.66 0.329488
Target:  5'- gCCCuugUAGuCGCcguugccaaaaacgAGCGCCAUCGCCuguuuugcgcucaccGCCg -3'
miRNA:   3'- -GGGca-GUC-GCG--------------UCGCGGUAGCGG---------------CGG- -5'
27614 5' -61.2 NC_005882.1 + 27598 0.66 0.328701
Target:  5'- gCCCGau-GCcgauuGCGGCGCCcugggcgauGUUGUCGCCg -3'
miRNA:   3'- -GGGCaguCG-----CGUCGCGG---------UAGCGGCGG- -5'
27614 5' -61.2 NC_005882.1 + 10888 0.66 0.328701
Target:  5'- cCCCG-CAGCGacgAGCGCgaccgccuugUAUUGCUGCUc -3'
miRNA:   3'- -GGGCaGUCGCg--UCGCG----------GUAGCGGCGG- -5'
27614 5' -61.2 NC_005882.1 + 15173 0.66 0.328701
Target:  5'- cCCUGUuugcaggccCAGCGCAGCaCCGgcgUGUCaGCCg -3'
miRNA:   3'- -GGGCA---------GUCGCGUCGcGGUa--GCGG-CGG- -5'
27614 5' -61.2 NC_005882.1 + 30906 0.66 0.320909
Target:  5'- gCCC--CAGgGCAGCGauccgCAUCGCC-CCg -3'
miRNA:   3'- -GGGcaGUCgCGUCGCg----GUAGCGGcGG- -5'
27614 5' -61.2 NC_005882.1 + 474 0.66 0.320909
Target:  5'- uUCCGUgcCAGCuCGGCaugGUUGUCGCCGCg -3'
miRNA:   3'- -GGGCA--GUCGcGUCG---CGGUAGCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.