miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27615 3' -51.8 NC_005882.1 + 2054 0.66 0.804573
Target:  5'- gUGAUCGGUagcaagucGUaCGUCCGCGUCUacgagcgcgUCGGCg -3'
miRNA:   3'- -ACUAGCUA--------CA-GUAGGUGCGGG---------AGUUG- -5'
27615 3' -51.8 NC_005882.1 + 1170 0.66 0.798472
Target:  5'- -cAUCGAUGUCGUCCGCuucgaaggaaaauucGUCguaUUCAACg -3'
miRNA:   3'- acUAGCUACAGUAGGUG---------------CGG---GAGUUG- -5'
27615 3' -51.8 NC_005882.1 + 22252 0.66 0.794364
Target:  5'- cGGUCc--GUCGuucggcUCCGCGUCUUCGACa -3'
miRNA:   3'- aCUAGcuaCAGU------AGGUGCGGGAGUUG- -5'
27615 3' -51.8 NC_005882.1 + 16795 0.66 0.783966
Target:  5'- cGucgCGAUGUCGUCCGucaCCUCAAg -3'
miRNA:   3'- aCua-GCUACAGUAGGUgcgGGAGUUg -5'
27615 3' -51.8 NC_005882.1 + 32396 0.66 0.777641
Target:  5'- cUGAUCGAUGgCGUCgACGCauccgcacugccguuCCUCGc- -3'
miRNA:   3'- -ACUAGCUACaGUAGgUGCG---------------GGAGUug -5'
27615 3' -51.8 NC_005882.1 + 18101 0.66 0.77339
Target:  5'- gUGuAUCGAgacagGUCAggcugCCACGCCg-CGGCa -3'
miRNA:   3'- -AC-UAGCUa----CAGUa----GGUGCGGgaGUUG- -5'
27615 3' -51.8 NC_005882.1 + 32237 0.66 0.762651
Target:  5'- aGGUCaacGUCGUaCACGCCCUgAACc -3'
miRNA:   3'- aCUAGcuaCAGUAgGUGCGGGAgUUG- -5'
27615 3' -51.8 NC_005882.1 + 25580 0.67 0.73406
Target:  5'- cUGAUCGAUuguccggccgaggcgGUCGUacuggCCGCGCagCUCGGCg -3'
miRNA:   3'- -ACUAGCUA---------------CAGUA-----GGUGCGg-GAGUUG- -5'
27615 3' -51.8 NC_005882.1 + 24803 0.67 0.718328
Target:  5'- aGGUCGA-GUUcgCCgAUGUCUUCGACg -3'
miRNA:   3'- aCUAGCUaCAGuaGG-UGCGGGAGUUG- -5'
27615 3' -51.8 NC_005882.1 + 26166 0.68 0.649236
Target:  5'- aUGAUCugcGUCAgcgcgUCCugGCCCUUGAUg -3'
miRNA:   3'- -ACUAGcuaCAGU-----AGGugCGGGAGUUG- -5'
27615 3' -51.8 NC_005882.1 + 32411 0.68 0.649236
Target:  5'- -uGUCGAUGUUGUCgAgGCgCUCGGCc -3'
miRNA:   3'- acUAGCUACAGUAGgUgCGgGAGUUG- -5'
27615 3' -51.8 NC_005882.1 + 12107 0.72 0.416405
Target:  5'- ----gGAUGUCucaAUUCAUGCCCUCGACc -3'
miRNA:   3'- acuagCUACAG---UAGGUGCGGGAGUUG- -5'
27615 3' -51.8 NC_005882.1 + 21807 0.73 0.387196
Target:  5'- aUGGUCGAUGcCAUCguCGCCCggcuGCg -3'
miRNA:   3'- -ACUAGCUACaGUAGguGCGGGagu-UG- -5'
27615 3' -51.8 NC_005882.1 + 24471 0.74 0.324494
Target:  5'- -aGUCGuUGUCGUCUugGCCCgcuUCGGCg -3'
miRNA:   3'- acUAGCuACAGUAGGugCGGG---AGUUG- -5'
27615 3' -51.8 NC_005882.1 + 13608 0.77 0.216424
Target:  5'- aGAUCGAgcgcaucGUCAUCuggauCACGUCCUCGACg -3'
miRNA:   3'- aCUAGCUa------CAGUAG-----GUGCGGGAGUUG- -5'
27615 3' -51.8 NC_005882.1 + 30917 1.11 0.000952
Target:  5'- cUGAUCGAUGUCAUCCACGCCCUCAACa -3'
miRNA:   3'- -ACUAGCUACAGUAGGUGCGGGAGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.