miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27616 3' -51.4 NC_005882.1 + 2242 0.66 0.869843
Target:  5'- uGAUCGACGagugccuucgcgauuGGAcGACggACGCACGcCCc -3'
miRNA:   3'- gCUAGCUGC---------------CUUaCUG--UGCGUGCuGG- -5'
27616 3' -51.4 NC_005882.1 + 21804 0.66 0.86653
Target:  5'- cCGcGUCGAacUGGcGAcGGCGCGCGgGACCu -3'
miRNA:   3'- -GC-UAGCU--GCC-UUaCUGUGCGUgCUGG- -5'
27616 3' -51.4 NC_005882.1 + 29732 0.66 0.86653
Target:  5'- -aGUCGACGaGcggcGACACGCuGCGGCUu -3'
miRNA:   3'- gcUAGCUGC-Cuua-CUGUGCG-UGCUGG- -5'
27616 3' -51.4 NC_005882.1 + 24402 0.66 0.86653
Target:  5'- cCGcGUCGGCGGcGAaGACAUGCugGcugacuuccgcGCCa -3'
miRNA:   3'- -GC-UAGCUGCC-UUaCUGUGCGugC-----------UGG- -5'
27616 3' -51.4 NC_005882.1 + 17056 0.66 0.865695
Target:  5'- gCGcUCGACGccgcacuGAAcaccuUGucCGCGCGCGACCu -3'
miRNA:   3'- -GCuAGCUGC-------CUU-----ACu-GUGCGUGCUGG- -5'
27616 3' -51.4 NC_005882.1 + 21469 0.66 0.858066
Target:  5'- uCGGUgcgccaGGCGGAGgaaaucgucGACGCGCacuugcGCGGCCg -3'
miRNA:   3'- -GCUAg-----CUGCCUUa--------CUGUGCG------UGCUGG- -5'
27616 3' -51.4 NC_005882.1 + 15409 0.66 0.858066
Target:  5'- aCGggCGGCGccuucGACGCGCggggcaACGGCCa -3'
miRNA:   3'- -GCuaGCUGCcuua-CUGUGCG------UGCUGG- -5'
27616 3' -51.4 NC_005882.1 + 32974 0.66 0.858066
Target:  5'- aGcUCGGCGGcc--GCACGCGCuACCu -3'
miRNA:   3'- gCuAGCUGCCuuacUGUGCGUGcUGG- -5'
27616 3' -51.4 NC_005882.1 + 12725 0.66 0.840387
Target:  5'- --uUCGACGGcau--CGCGCGCG-CCg -3'
miRNA:   3'- gcuAGCUGCCuuacuGUGCGUGCuGG- -5'
27616 3' -51.4 NC_005882.1 + 36502 0.66 0.840387
Target:  5'- aGAUCG-CGGcgaaaGCGCGCA-GACCg -3'
miRNA:   3'- gCUAGCuGCCuuac-UGUGCGUgCUGG- -5'
27616 3' -51.4 NC_005882.1 + 3471 0.66 0.83119
Target:  5'- -cGUCGGCGG--UGACGaccgGCACGcCCa -3'
miRNA:   3'- gcUAGCUGCCuuACUGUg---CGUGCuGG- -5'
27616 3' -51.4 NC_005882.1 + 15377 0.66 0.83119
Target:  5'- aGcUCGACGauGAAcGGCACGCgGCGAaCCa -3'
miRNA:   3'- gCuAGCUGC--CUUaCUGUGCG-UGCU-GG- -5'
27616 3' -51.4 NC_005882.1 + 32762 0.66 0.83119
Target:  5'- uGAUCGugG---UGAU-CGCGCGAUCg -3'
miRNA:   3'- gCUAGCugCcuuACUGuGCGUGCUGG- -5'
27616 3' -51.4 NC_005882.1 + 19228 0.66 0.83119
Target:  5'- cCGAcgUGACGGAGguaGuACACGCcCGGCa -3'
miRNA:   3'- -GCUa-GCUGCCUUa--C-UGUGCGuGCUGg -5'
27616 3' -51.4 NC_005882.1 + 21640 0.66 0.83119
Target:  5'- cCGGUCGACGGGcauacagccaGUGcCGgGCcagauUGACCg -3'
miRNA:   3'- -GCUAGCUGCCU----------UACuGUgCGu----GCUGG- -5'
27616 3' -51.4 NC_005882.1 + 26931 0.67 0.821768
Target:  5'- aGAUUuuCGGcauggGGCGgGCGCGGCCg -3'
miRNA:   3'- gCUAGcuGCCuua--CUGUgCGUGCUGG- -5'
27616 3' -51.4 NC_005882.1 + 4525 0.67 0.821768
Target:  5'- aGGUCGAgGucGUcGAgGCuGCGCGGCCa -3'
miRNA:   3'- gCUAGCUgCcuUA-CUgUG-CGUGCUGG- -5'
27616 3' -51.4 NC_005882.1 + 29087 0.67 0.812131
Target:  5'- aGAUCGAgGucgugcucGAA-GACACGgAUGGCCg -3'
miRNA:   3'- gCUAGCUgC--------CUUaCUGUGCgUGCUGG- -5'
27616 3' -51.4 NC_005882.1 + 28581 0.67 0.801298
Target:  5'- cCGAUCGgcgcaagGCGGcuUGGCgaACGCgACGAUCg -3'
miRNA:   3'- -GCUAGC-------UGCCuuACUG--UGCG-UGCUGG- -5'
27616 3' -51.4 NC_005882.1 + 31844 0.67 0.799303
Target:  5'- aCGAUCGACuggugcgcgcucuuGGcGUGgaACACGUACGcgaGCCg -3'
miRNA:   3'- -GCUAGCUG--------------CCuUAC--UGUGCGUGC---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.