miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27616 5' -61.7 NC_005882.1 + 33424 0.66 0.32179
Target:  5'- -cGCUgCCACCGGUGGcUgGCGUUc- -3'
miRNA:   3'- gcCGAgGGUGGCCGCCuAgCGCAGcu -5'
27616 5' -61.7 NC_005882.1 + 22122 0.66 0.314178
Target:  5'- gGGCggaagCCCACCagGGCGGugcgaaCGUGaUCGAg -3'
miRNA:   3'- gCCGa----GGGUGG--CCGCCua----GCGC-AGCU- -5'
27616 5' -61.7 NC_005882.1 + 18328 0.66 0.314178
Target:  5'- aCGGCgagCUgACC-GCGGccgcGUCGCGUCGc -3'
miRNA:   3'- -GCCGa--GGgUGGcCGCC----UAGCGCAGCu -5'
27616 5' -61.7 NC_005882.1 + 25099 0.66 0.309676
Target:  5'- cCGGCUCgggCGCCGGgccgccugacaucaGGAuugcuuugUCGCGUCGAc -3'
miRNA:   3'- -GCCGAGg--GUGGCCg-------------CCU--------AGCGCAGCU- -5'
27616 5' -61.7 NC_005882.1 + 31726 0.66 0.302282
Target:  5'- cCGGCUCgCACCacaagcauucagcacGGCGGGcucccggcUCGCGUaCGu -3'
miRNA:   3'- -GCCGAGgGUGG---------------CCGCCU--------AGCGCA-GCu -5'
27616 5' -61.7 NC_005882.1 + 4715 0.66 0.299363
Target:  5'- -cGCUCgCGggccgguaagcUCGGCGacGAUCGCGUCGAg -3'
miRNA:   3'- gcCGAGgGU-----------GGCCGC--CUAGCGCAGCU- -5'
27616 5' -61.7 NC_005882.1 + 14352 0.67 0.291449
Target:  5'- aCGGUcgucauccugcaaUCCCGagaaucugaCGaCGGAUCGCGUCGGc -3'
miRNA:   3'- -GCCG-------------AGGGUg--------GCcGCCUAGCGCAGCU- -5'
27616 5' -61.7 NC_005882.1 + 18838 0.68 0.251152
Target:  5'- uCGGCUUUacgauugCGCCGGCGuGAUaCGCG-CGAu -3'
miRNA:   3'- -GCCGAGG-------GUGGCCGC-CUA-GCGCaGCU- -5'
27616 5' -61.7 NC_005882.1 + 25151 0.68 0.244901
Target:  5'- cCGGCUCCUACCucaucgcGGCGGcgaucaaggccAUCGUGUgGc -3'
miRNA:   3'- -GCCGAGGGUGG-------CCGCC-----------UAGCGCAgCu -5'
27616 5' -61.7 NC_005882.1 + 12105 0.7 0.170787
Target:  5'- gCGGCUCUC-CUGGUGGAUuUGCGccgCGAa -3'
miRNA:   3'- -GCCGAGGGuGGCCGCCUA-GCGCa--GCU- -5'
27616 5' -61.7 NC_005882.1 + 6104 0.71 0.141607
Target:  5'- aCGGCcgcagCUCGCCGGUGGA-CuCGUCGAg -3'
miRNA:   3'- -GCCGa----GGGUGGCCGCCUaGcGCAGCU- -5'
27616 5' -61.7 NC_005882.1 + 941 0.73 0.099232
Target:  5'- uGGCUUgaGCUGGCGGAUCgggGCGUCGu -3'
miRNA:   3'- gCCGAGggUGGCCGCCUAG---CGCAGCu -5'
27616 5' -61.7 NC_005882.1 + 1287 0.75 0.073021
Target:  5'- gGGUUCCCGCCGGUagauGGAUcgagcggccugCGCGUCGu -3'
miRNA:   3'- gCCGAGGGUGGCCG----CCUA-----------GCGCAGCu -5'
27616 5' -61.7 NC_005882.1 + 31071 1.08 0.000209
Target:  5'- gCGGCUCCCACCGGCGGAUCGCGUCGAc -3'
miRNA:   3'- -GCCGAGGGUGGCCGCCUAGCGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.