miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27617 3' -54.9 NC_005882.1 + 21740 0.66 0.602941
Target:  5'- --cUCGGgUCGCCGAuCGUCAgcuuguugUCGCGg -3'
miRNA:   3'- uuaGGCCaAGUGGCUcGCAGU--------AGCGC- -5'
27617 3' -54.9 NC_005882.1 + 1964 0.66 0.602941
Target:  5'- uGGUCCGugUCGCCGAcGCGcUCGUagaCGCGg -3'
miRNA:   3'- -UUAGGCcaAGUGGCU-CGC-AGUA---GCGC- -5'
27617 3' -54.9 NC_005882.1 + 15309 0.66 0.591626
Target:  5'- --cCUGGUUCGCCGcGUGccguUCAUCGuCGa -3'
miRNA:   3'- uuaGGCCAAGUGGCuCGC----AGUAGC-GC- -5'
27617 3' -54.9 NC_005882.1 + 15263 0.67 0.576971
Target:  5'- --aCCGGgagCgccgugagcagcggGCCGAGCGUCGcuucgagccaaUCGCGg -3'
miRNA:   3'- uuaGGCCaa-G--------------UGGCUCGCAGU-----------AGCGC- -5'
27617 3' -54.9 NC_005882.1 + 5320 0.67 0.524808
Target:  5'- --gUCGGU--GCCGGGCGUCAUgGuCGg -3'
miRNA:   3'- uuaGGCCAagUGGCUCGCAGUAgC-GC- -5'
27617 3' -54.9 NC_005882.1 + 21165 0.68 0.513929
Target:  5'- -uUUCGGcaaCGCCGAGCGcCuUCGCGc -3'
miRNA:   3'- uuAGGCCaa-GUGGCUCGCaGuAGCGC- -5'
27617 3' -54.9 NC_005882.1 + 9768 0.68 0.471408
Target:  5'- --cCCGGauaUUCACCGAGCGaUCA--GCGa -3'
miRNA:   3'- uuaGGCC---AAGUGGCUCGC-AGUagCGC- -5'
27617 3' -54.9 NC_005882.1 + 33719 0.69 0.461056
Target:  5'- gAAUCCGGUcgUCG-CGAGUuUCGUCGUGu -3'
miRNA:   3'- -UUAGGCCA--AGUgGCUCGcAGUAGCGC- -5'
27617 3' -54.9 NC_005882.1 + 14212 0.69 0.439716
Target:  5'- -uUCUGGUUCACgcucgcgCGGGCcagCGUCGCGa -3'
miRNA:   3'- uuAGGCCAAGUG-------GCUCGca-GUAGCGC- -5'
27617 3' -54.9 NC_005882.1 + 7852 0.73 0.261938
Target:  5'- aGGUUCGucgccuuggugaGUUCGCCGGGCGUCAggccaugCGCGa -3'
miRNA:   3'- -UUAGGC------------CAAGUGGCUCGCAGUa------GCGC- -5'
27617 3' -54.9 NC_005882.1 + 31200 1.07 0.000857
Target:  5'- aAAUCCGGUUCACCGAGCGUCAUCGCGg -3'
miRNA:   3'- -UUAGGCCAAGUGGCUCGCAGUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.