miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27617 5' -52.6 NC_005882.1 + 31508 0.66 0.768941
Target:  5'- uUCGCGAccgacaccgacGUGACGCuCGUC-GCc-GGCc -3'
miRNA:   3'- gAGUGCU-----------UACUGCG-GCAGuCGuuCCG- -5'
27617 5' -52.6 NC_005882.1 + 33349 0.66 0.765754
Target:  5'- uUCACGAAUGcagucgucgccaGCGCCGUCGaguuaucccccuguGCuugcgucGGCg -3'
miRNA:   3'- gAGUGCUUAC------------UGCGGCAGU--------------CGuu-----CCG- -5'
27617 5' -52.6 NC_005882.1 + 25641 0.66 0.758264
Target:  5'- gCUCACGcagcgcGGCGCCGcgcgcCAGCcGGGUc -3'
miRNA:   3'- -GAGUGCuua---CUGCGGCa----GUCGuUCCG- -5'
27617 5' -52.6 NC_005882.1 + 28080 0.66 0.747445
Target:  5'- --gGCG-AUGGCGCuCGUUuuuGGCAAcGGCg -3'
miRNA:   3'- gagUGCuUACUGCG-GCAG---UCGUU-CCG- -5'
27617 5' -52.6 NC_005882.1 + 12545 0.66 0.747445
Target:  5'- --gGCGGccGGCGCUG-CGGCGAucGGCg -3'
miRNA:   3'- gagUGCUuaCUGCGGCaGUCGUU--CCG- -5'
27617 5' -52.6 NC_005882.1 + 28909 0.66 0.747445
Target:  5'- gCUCGCGAGaacCGCCGuaaUCGGCAcgcugGGGUu -3'
miRNA:   3'- -GAGUGCUUacuGCGGC---AGUCGU-----UCCG- -5'
27617 5' -52.6 NC_005882.1 + 6845 0.66 0.747445
Target:  5'- -cCGCGAAgaaGACGCgCGUCAagAAGGUc -3'
miRNA:   3'- gaGUGCUUa--CUGCG-GCAGUcgUUCCG- -5'
27617 5' -52.6 NC_005882.1 + 23748 0.66 0.736498
Target:  5'- --gGCGAcgGcGCGCUGcUCGGCuucAAGGCa -3'
miRNA:   3'- gagUGCUuaC-UGCGGC-AGUCG---UUCCG- -5'
27617 5' -52.6 NC_005882.1 + 1781 0.66 0.735397
Target:  5'- -aCACG-GUGACGCUGacgggauUCGGCGuauucagcguGGGCg -3'
miRNA:   3'- gaGUGCuUACUGCGGC-------AGUCGU----------UCCG- -5'
27617 5' -52.6 NC_005882.1 + 12927 0.66 0.734294
Target:  5'- -aCGCGGAcaaaGCCGgcagugaacacgCAGCGAGGCa -3'
miRNA:   3'- gaGUGCUUacugCGGCa-----------GUCGUUCCG- -5'
27617 5' -52.6 NC_005882.1 + 21354 0.66 0.729874
Target:  5'- --uGCGGAUGACGUCGcCGGCcgccgucgccgcaucGAGcGCg -3'
miRNA:   3'- gagUGCUUACUGCGGCaGUCG---------------UUC-CG- -5'
27617 5' -52.6 NC_005882.1 + 139 0.66 0.725436
Target:  5'- -cCGCGAG-GGCcgcgucagGCCGaaGGCAAGGCu -3'
miRNA:   3'- gaGUGCUUaCUG--------CGGCagUCGUUCCG- -5'
27617 5' -52.6 NC_005882.1 + 29662 0.67 0.714272
Target:  5'- gUgACGggUGACuCCGUgGGCGucgucGGCc -3'
miRNA:   3'- gAgUGCuuACUGcGGCAgUCGUu----CCG- -5'
27617 5' -52.6 NC_005882.1 + 16528 0.67 0.691691
Target:  5'- -gCGCGGAUGcuUGCCGacCAGCAucGGCg -3'
miRNA:   3'- gaGUGCUUACu-GCGGCa-GUCGUu-CCG- -5'
27617 5' -52.6 NC_005882.1 + 36063 0.67 0.679157
Target:  5'- --uGCGGAaagcUGGCGCCGUCAcCAcugcuauccuauuAGGCg -3'
miRNA:   3'- gagUGCUU----ACUGCGGCAGUcGU-------------UCCG- -5'
27617 5' -52.6 NC_005882.1 + 6507 0.67 0.668858
Target:  5'- gCUCGCGAcgAUGAgUGCCGUCuugaacgaacGCAuuguGGCu -3'
miRNA:   3'- -GAGUGCU--UACU-GCGGCAGu---------CGUu---CCG- -5'
27617 5' -52.6 NC_005882.1 + 17827 0.68 0.661974
Target:  5'- -cCGCGuGGUGGCGCUGUCgcAcgacgagaucaucguGCGAGGCa -3'
miRNA:   3'- gaGUGC-UUACUGCGGCAG--U---------------CGUUCCG- -5'
27617 5' -52.6 NC_005882.1 + 32278 0.68 0.622834
Target:  5'- gUgGCGAAUGGCugaucugcucuuGCCGcCAGCGcuGGCg -3'
miRNA:   3'- gAgUGCUUACUG------------CGGCaGUCGUu-CCG- -5'
27617 5' -52.6 NC_005882.1 + 17495 0.68 0.622834
Target:  5'- uUCACGAAagagcUGACGCCcGUacuGCAauccaaGGGCu -3'
miRNA:   3'- gAGUGCUU-----ACUGCGG-CAgu-CGU------UCCG- -5'
27617 5' -52.6 NC_005882.1 + 19686 0.68 0.621682
Target:  5'- uUCACGGcacGUGA-GCCGuucgaguUCGGCgAAGGCg -3'
miRNA:   3'- gAGUGCU---UACUgCGGC-------AGUCG-UUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.