miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27618 3' -57.4 NC_005882.1 + 3880 0.66 0.508054
Target:  5'- cGGCAGCG-CGUgCGCuUCGUCgaucaCGAgGCa -3'
miRNA:   3'- -CUGUCGCgGCA-GCG-AGCAGa----GCUgUG- -5'
27618 3' -57.4 NC_005882.1 + 22624 0.66 0.508054
Target:  5'- -cCGGUGCaGUCGCUguccgaCGUCgacgCGGCGCa -3'
miRNA:   3'- cuGUCGCGgCAGCGA------GCAGa---GCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 29791 0.66 0.497509
Target:  5'- cGCAGCGUguCGcCGCUCGUCgacUGAC-Cg -3'
miRNA:   3'- cUGUCGCG--GCaGCGAGCAGa--GCUGuG- -5'
27618 3' -57.4 NC_005882.1 + 26027 0.66 0.472617
Target:  5'- -uCAGCGCCGcgUCGCccuugaucccgagCGUCUCGGagaACg -3'
miRNA:   3'- cuGUCGCGGC--AGCGa------------GCAGAGCUg--UG- -5'
27618 3' -57.4 NC_005882.1 + 18383 0.66 0.466492
Target:  5'- gGACAGCgggcaaaugGCCG-CGagCGUCUCGACGg -3'
miRNA:   3'- -CUGUCG---------CGGCaGCgaGCAGAGCUGUg -5'
27618 3' -57.4 NC_005882.1 + 12718 0.66 0.466492
Target:  5'- cGCAGCGCgCGgcggCGCUCG-C-CGGCGa -3'
miRNA:   3'- cUGUCGCG-GCa---GCGAGCaGaGCUGUg -5'
27618 3' -57.4 NC_005882.1 + 23271 0.66 0.465475
Target:  5'- -cCAGCGCCuG-CGCgagCGUCgugccgaUCGGCGCa -3'
miRNA:   3'- cuGUCGCGG-CaGCGa--GCAG-------AGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 19476 0.66 0.456376
Target:  5'- cGGCGaauGCGCUGgucggCGCaUCGUCUUGuCGCg -3'
miRNA:   3'- -CUGU---CGCGGCa----GCG-AGCAGAGCuGUG- -5'
27618 3' -57.4 NC_005882.1 + 6645 0.66 0.456376
Target:  5'- uGCGGCG-CGcCGUgCGUCUCGGCGu -3'
miRNA:   3'- cUGUCGCgGCaGCGaGCAGAGCUGUg -5'
27618 3' -57.4 NC_005882.1 + 32018 0.66 0.45537
Target:  5'- aGCGGcCGCCGaCGCUCGUCggucaggUUGuCGCg -3'
miRNA:   3'- cUGUC-GCGGCaGCGAGCAG-------AGCuGUG- -5'
27618 3' -57.4 NC_005882.1 + 31882 0.67 0.446379
Target:  5'- aGGCAGCGUCcagGUcuaccCGCUCG--UCGACACg -3'
miRNA:   3'- -CUGUCGCGG---CA-----GCGAGCagAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 30045 0.67 0.436505
Target:  5'- cGGCgAGCGCCGagCGCUUcagCUCGACu- -3'
miRNA:   3'- -CUG-UCGCGGCa-GCGAGca-GAGCUGug -5'
27618 3' -57.4 NC_005882.1 + 22257 0.67 0.407659
Target:  5'- aACAGCGguCCGUCGUUCGgcuccgcgUCUuCGACAa -3'
miRNA:   3'- cUGUCGC--GGCAGCGAGC--------AGA-GCUGUg -5'
27618 3' -57.4 NC_005882.1 + 33330 0.67 0.402034
Target:  5'- -cCAGCGCCGUCgaguuaucccccuguGCUUGcgUCGGCGCc -3'
miRNA:   3'- cuGUCGCGGCAG---------------CGAGCagAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 25366 0.67 0.398312
Target:  5'- -uCGGCGCCG-CGCUU-UC-CGGCACg -3'
miRNA:   3'- cuGUCGCGGCaGCGAGcAGaGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 12599 0.67 0.398312
Target:  5'- cGGCGGCuaucacGCCGgugCGCUUGcCggCGACGCg -3'
miRNA:   3'- -CUGUCG------CGGCa--GCGAGCaGa-GCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 25695 0.67 0.398312
Target:  5'- uGGCAGcCGCCGUCGCguaugugcCGagcaUgUCGGCGCc -3'
miRNA:   3'- -CUGUC-GCGGCAGCGa-------GC----AgAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 8661 0.68 0.37111
Target:  5'- cGACGGCGUaCGcuuuUCGCaggcgcugcgUCGUUUCGGCGCu -3'
miRNA:   3'- -CUGUCGCG-GC----AGCG----------AGCAGAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 28924 0.68 0.368461
Target:  5'- cGACAGCGCaauGcCGCUCG-CgagaaccgccguaaUCGGCACg -3'
miRNA:   3'- -CUGUCGCGg--CaGCGAGCaG--------------AGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 14713 0.68 0.362329
Target:  5'- cGACAGUGCCGUgaCGCgaaaGcC-CGACGCg -3'
miRNA:   3'- -CUGUCGCGGCA--GCGag--CaGaGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.