miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27618 3' -57.4 NC_005882.1 + 31541 1.1 0.000318
Target:  5'- aGACAGCGCCGUCGCUCGUCUCGACACg -3'
miRNA:   3'- -CUGUCGCGGCAGCGAGCAGAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 16825 0.77 0.088647
Target:  5'- cGACGGCGCCGaUCGaCcCGUCUuCGACAUg -3'
miRNA:   3'- -CUGUCGCGGC-AGC-GaGCAGA-GCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 32866 0.75 0.132359
Target:  5'- gGGCGGCGCCGUUGUagCGcaUCGGCACa -3'
miRNA:   3'- -CUGUCGCGGCAGCGa-GCagAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 12777 0.74 0.148117
Target:  5'- cGGCgAGCGCCGcCGCgcgcugCGUCUCcGCGCg -3'
miRNA:   3'- -CUG-UCGCGGCaGCGa-----GCAGAGcUGUG- -5'
27618 3' -57.4 NC_005882.1 + 34640 0.74 0.161037
Target:  5'- cGGCAcCGCCGagCGC-CGUCUCGACAa -3'
miRNA:   3'- -CUGUcGCGGCa-GCGaGCAGAGCUGUg -5'
27618 3' -57.4 NC_005882.1 + 18983 0.73 0.165564
Target:  5'- uGCAGCaGCCGUCGCggcgaggucCGUUUCGGCGa -3'
miRNA:   3'- cUGUCG-CGGCAGCGa--------GCAGAGCUGUg -5'
27618 3' -57.4 NC_005882.1 + 25584 0.73 0.172095
Target:  5'- cGCGGCGCCG-CGCUgCGUgagcaacgccaggggCUCGGCGCc -3'
miRNA:   3'- cUGUCGCGGCaGCGA-GCA---------------GAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 31492 0.72 0.211686
Target:  5'- cGACGGCGCUGucUCGUUCG-CgacCGACACc -3'
miRNA:   3'- -CUGUCGCGGC--AGCGAGCaGa--GCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 21742 0.72 0.217444
Target:  5'- cGCGcGCGCCGUCGCcag-UUCGACGCg -3'
miRNA:   3'- cUGU-CGCGGCAGCGagcaGAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 10828 0.71 0.229361
Target:  5'- aGGCGgucGCGCuCGUCGCUgCGgggCUCGugACg -3'
miRNA:   3'- -CUGU---CGCG-GCAGCGA-GCa--GAGCugUG- -5'
27618 3' -57.4 NC_005882.1 + 12596 0.71 0.235524
Target:  5'- cGCAGCGCCGgcCGC-CGcCgCGACACa -3'
miRNA:   3'- cUGUCGCGGCa-GCGaGCaGaGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 12541 0.7 0.261574
Target:  5'- cGGCGGCgGCCGgCGCUgCGgcgaUCGGCGCa -3'
miRNA:   3'- -CUGUCG-CGGCaGCGA-GCag--AGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 29181 0.7 0.297374
Target:  5'- cGGC-GCGCCGUUGCUCG-CgugCGGcCGCu -3'
miRNA:   3'- -CUGuCGCGGCAGCGAGCaGa--GCU-GUG- -5'
27618 3' -57.4 NC_005882.1 + 19883 0.69 0.304975
Target:  5'- cGACGGUGUCGgCGCcCGUCgUCGuCACg -3'
miRNA:   3'- -CUGUCGCGGCaGCGaGCAG-AGCuGUG- -5'
27618 3' -57.4 NC_005882.1 + 15108 0.69 0.312724
Target:  5'- cGACAgccauGCGCCGcCGCU-GUUcuUCGGCACg -3'
miRNA:   3'- -CUGU-----CGCGGCaGCGAgCAG--AGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 34479 0.68 0.353693
Target:  5'- uGCAGCggGCCGUCgGCUCGgucgucggaUCGAUGCg -3'
miRNA:   3'- cUGUCG--CGGCAG-CGAGCag-------AGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 14713 0.68 0.362329
Target:  5'- cGACAGUGCCGUgaCGCgaaaGcC-CGACGCg -3'
miRNA:   3'- -CUGUCGCGGCA--GCGag--CaGaGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 28924 0.68 0.368461
Target:  5'- cGACAGCGCaauGcCGCUCG-CgagaaccgccguaaUCGGCACg -3'
miRNA:   3'- -CUGUCGCGg--CaGCGAGCaG--------------AGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 8661 0.68 0.37111
Target:  5'- cGACGGCGUaCGcuuuUCGCaggcgcugcgUCGUUUCGGCGCu -3'
miRNA:   3'- -CUGUCGCG-GC----AGCG----------AGCAGAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 12599 0.67 0.398312
Target:  5'- cGGCGGCuaucacGCCGgugCGCUUGcCggCGACGCg -3'
miRNA:   3'- -CUGUCG------CGGCa--GCGAGCaGa-GCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.