miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27618 3' -57.4 NC_005882.1 + 16825 0.77 0.088647
Target:  5'- cGACGGCGCCGaUCGaCcCGUCUuCGACAUg -3'
miRNA:   3'- -CUGUCGCGGC-AGC-GaGCAGA-GCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 22624 0.66 0.508054
Target:  5'- -cCGGUGCaGUCGCUguccgaCGUCgacgCGGCGCa -3'
miRNA:   3'- cuGUCGCGgCAGCGA------GCAGa---GCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 3880 0.66 0.508054
Target:  5'- cGGCAGCG-CGUgCGCuUCGUCgaucaCGAgGCa -3'
miRNA:   3'- -CUGUCGCgGCA-GCG-AGCAGa----GCUgUG- -5'
27618 3' -57.4 NC_005882.1 + 18383 0.66 0.466492
Target:  5'- gGACAGCgggcaaaugGCCG-CGagCGUCUCGACGg -3'
miRNA:   3'- -CUGUCG---------CGGCaGCgaGCAGAGCUGUg -5'
27618 3' -57.4 NC_005882.1 + 12718 0.66 0.466492
Target:  5'- cGCAGCGCgCGgcggCGCUCG-C-CGGCGa -3'
miRNA:   3'- cUGUCGCG-GCa---GCGAGCaGaGCUGUg -5'
27618 3' -57.4 NC_005882.1 + 6645 0.66 0.456376
Target:  5'- uGCGGCG-CGcCGUgCGUCUCGGCGu -3'
miRNA:   3'- cUGUCGCgGCaGCGaGCAGAGCUGUg -5'
27618 3' -57.4 NC_005882.1 + 31882 0.67 0.446379
Target:  5'- aGGCAGCGUCcagGUcuaccCGCUCG--UCGACACg -3'
miRNA:   3'- -CUGUCGCGG---CA-----GCGAGCagAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 25366 0.67 0.398312
Target:  5'- -uCGGCGCCG-CGCUU-UC-CGGCACg -3'
miRNA:   3'- cuGUCGCGGCaGCGAGcAGaGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 12599 0.67 0.398312
Target:  5'- cGGCGGCuaucacGCCGgugCGCUUGcCggCGACGCg -3'
miRNA:   3'- -CUGUCG------CGGCa--GCGAGCaGa-GCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 8661 0.68 0.37111
Target:  5'- cGACGGCGUaCGcuuuUCGCaggcgcugcgUCGUUUCGGCGCu -3'
miRNA:   3'- -CUGUCGCG-GC----AGCG----------AGCAGAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 25584 0.73 0.172095
Target:  5'- cGCGGCGCCG-CGCUgCGUgagcaacgccaggggCUCGGCGCc -3'
miRNA:   3'- cUGUCGCGGCaGCGA-GCA---------------GAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 31492 0.72 0.211686
Target:  5'- cGACGGCGCUGucUCGUUCG-CgacCGACACc -3'
miRNA:   3'- -CUGUCGCGGC--AGCGAGCaGa--GCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 21742 0.72 0.217444
Target:  5'- cGCGcGCGCCGUCGCcag-UUCGACGCg -3'
miRNA:   3'- cUGU-CGCGGCAGCGagcaGAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 10828 0.71 0.229361
Target:  5'- aGGCGgucGCGCuCGUCGCUgCGgggCUCGugACg -3'
miRNA:   3'- -CUGU---CGCG-GCAGCGA-GCa--GAGCugUG- -5'
27618 3' -57.4 NC_005882.1 + 12541 0.7 0.261574
Target:  5'- cGGCGGCgGCCGgCGCUgCGgcgaUCGGCGCa -3'
miRNA:   3'- -CUGUCG-CGGCaGCGA-GCag--AGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 29181 0.7 0.297374
Target:  5'- cGGC-GCGCCGUUGCUCG-CgugCGGcCGCu -3'
miRNA:   3'- -CUGuCGCGGCAGCGAGCaGa--GCU-GUG- -5'
27618 3' -57.4 NC_005882.1 + 34479 0.68 0.353693
Target:  5'- uGCAGCggGCCGUCgGCUCGgucgucggaUCGAUGCg -3'
miRNA:   3'- cUGUCG--CGGCAG-CGAGCag-------AGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 29791 0.66 0.497509
Target:  5'- cGCAGCGUguCGcCGCUCGUCgacUGAC-Cg -3'
miRNA:   3'- cUGUCGCG--GCaGCGAGCAGa--GCUGuG- -5'
27618 3' -57.4 NC_005882.1 + 32866 0.75 0.132359
Target:  5'- gGGCGGCGCCGUUGUagCGcaUCGGCACa -3'
miRNA:   3'- -CUGUCGCGGCAGCGa-GCagAGCUGUG- -5'
27618 3' -57.4 NC_005882.1 + 12777 0.74 0.148117
Target:  5'- cGGCgAGCGCCGcCGCgcgcugCGUCUCcGCGCg -3'
miRNA:   3'- -CUG-UCGCGGCaGCGa-----GCAGAGcUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.