miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27618 5' -52 NC_005882.1 + 28509 0.66 0.770279
Target:  5'- uUGCuugauguuGGUCAGCAcGcUCGACGaGCGACu -3'
miRNA:   3'- gACG--------UUAGUCGUcCaAGCUGC-CGUUG- -5'
27618 5' -52 NC_005882.1 + 12991 0.66 0.770279
Target:  5'- -cGCAA-CAGCuc---CGGCGGCAGCa -3'
miRNA:   3'- gaCGUUaGUCGuccaaGCUGCCGUUG- -5'
27618 5' -52 NC_005882.1 + 12515 0.66 0.759431
Target:  5'- cCUGCuuucgcgCGGcCAGuGUgucgCGGCGGCGGCc -3'
miRNA:   3'- -GACGuua----GUC-GUC-CAa---GCUGCCGUUG- -5'
27618 5' -52 NC_005882.1 + 21572 0.66 0.748434
Target:  5'- -gGCGAcagCGGCAGGUUguaGCGGCcGCg -3'
miRNA:   3'- gaCGUUa--GUCGUCCAAgc-UGCCGuUG- -5'
27618 5' -52 NC_005882.1 + 21099 0.66 0.737304
Target:  5'- -aGCGGUU--CAGGc-CGGCGGCAGCg -3'
miRNA:   3'- gaCGUUAGucGUCCaaGCUGCCGUUG- -5'
27618 5' -52 NC_005882.1 + 570 0.66 0.726053
Target:  5'- -aGCGAgaUCGGCAGauuUUCGacgaauuccGCGGCGACa -3'
miRNA:   3'- gaCGUU--AGUCGUCc--AAGC---------UGCCGUUG- -5'
27618 5' -52 NC_005882.1 + 25670 0.67 0.714697
Target:  5'- -cGUAAUCGGCGcuGUUCGGCaGGCcGCc -3'
miRNA:   3'- gaCGUUAGUCGUc-CAAGCUG-CCGuUG- -5'
27618 5' -52 NC_005882.1 + 10778 0.67 0.714697
Target:  5'- -cGUGAUCuuCGGG-UCGACGGCGGu -3'
miRNA:   3'- gaCGUUAGucGUCCaAGCUGCCGUUg -5'
27618 5' -52 NC_005882.1 + 12319 0.67 0.703248
Target:  5'- -cGCGAUCAGCGcg--UGACGGCuGCc -3'
miRNA:   3'- gaCGUUAGUCGUccaaGCUGCCGuUG- -5'
27618 5' -52 NC_005882.1 + 18686 0.67 0.69172
Target:  5'- -cGCGAUCGGCucgucgacAGGUuagCGGCGGUucgcuGCg -3'
miRNA:   3'- gaCGUUAGUCG--------UCCAa--GCUGCCGu----UG- -5'
27618 5' -52 NC_005882.1 + 15654 0.67 0.680127
Target:  5'- -cGCGAcCGGcCAGGa-CGACGGCAAg -3'
miRNA:   3'- gaCGUUaGUC-GUCCaaGCUGCCGUUg -5'
27618 5' -52 NC_005882.1 + 26715 0.67 0.680127
Target:  5'- gUGU--UCAuCAGGUccgugagCGACGGCAGCa -3'
miRNA:   3'- gACGuuAGUcGUCCAa------GCUGCCGUUG- -5'
27618 5' -52 NC_005882.1 + 33105 0.67 0.668482
Target:  5'- aCUGCGAau-GCGGG-UCGggcGCGGCGAUa -3'
miRNA:   3'- -GACGUUaguCGUCCaAGC---UGCCGUUG- -5'
27618 5' -52 NC_005882.1 + 22945 0.68 0.621642
Target:  5'- -gGCAcgauUCGcCGGGUgCGACGGCGGCc -3'
miRNA:   3'- gaCGUu---AGUcGUCCAaGCUGCCGUUG- -5'
27618 5' -52 NC_005882.1 + 12721 0.69 0.586578
Target:  5'- -aGCGcgCGGCGGcGcUCGcCGGCGACc -3'
miRNA:   3'- gaCGUuaGUCGUC-CaAGCuGCCGUUG- -5'
27618 5' -52 NC_005882.1 + 28632 0.69 0.563399
Target:  5'- -cGCAAUCGaccgggccGCGGGccagcucUCGACGGCGAg -3'
miRNA:   3'- gaCGUUAGU--------CGUCCa------AGCUGCCGUUg -5'
27618 5' -52 NC_005882.1 + 17680 0.7 0.529124
Target:  5'- -gGCcGUCuGCAGGUUCGuuCGGUAGa -3'
miRNA:   3'- gaCGuUAGuCGUCCAAGCu-GCCGUUg -5'
27618 5' -52 NC_005882.1 + 20664 0.7 0.529124
Target:  5'- -----uUCAGCAGG-UCGACGGUcACg -3'
miRNA:   3'- gacguuAGUCGUCCaAGCUGCCGuUG- -5'
27618 5' -52 NC_005882.1 + 4869 0.71 0.452585
Target:  5'- -aGCGAgagCGGCGcGaGUUCGACGcGCGGCg -3'
miRNA:   3'- gaCGUUa--GUCGU-C-CAAGCUGC-CGUUG- -5'
27618 5' -52 NC_005882.1 + 27546 0.71 0.431831
Target:  5'- -cGCAAUCGGCAucGGgcgcucgUCGGCGGUcGCc -3'
miRNA:   3'- gaCGUUAGUCGU--CCa------AGCUGCCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.