miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27619 3' -58.7 NC_005882.1 + 21750 0.66 0.449173
Target:  5'- cGCCgGGCCGcucgggUCgCCGAUCGucAGCUUGUu -3'
miRNA:   3'- -CGG-UCGGCa-----AG-GGCUAGC--UCGGACGc -5'
27619 3' -58.7 NC_005882.1 + 17926 0.66 0.449173
Target:  5'- cGCCGGCCGc-CUCGAccUUGAuGCCUcGCa -3'
miRNA:   3'- -CGGUCGGCaaGGGCU--AGCU-CGGA-CGc -5'
27619 3' -58.7 NC_005882.1 + 3314 0.66 0.439387
Target:  5'- gGCCGGCCGacgaUCCaGAUCG-GCCcGUa -3'
miRNA:   3'- -CGGUCGGCa---AGGgCUAGCuCGGaCGc -5'
27619 3' -58.7 NC_005882.1 + 28244 0.66 0.439387
Target:  5'- cGCCGGCCGUacagCCC-AagGuGCCgccgGCGg -3'
miRNA:   3'- -CGGUCGGCAa---GGGcUagCuCGGa---CGC- -5'
27619 3' -58.7 NC_005882.1 + 28669 0.66 0.429724
Target:  5'- cGCCGGUaaucgUCCCGAUCGucgcguucgccaAGCCgccuUGCGc -3'
miRNA:   3'- -CGGUCGgca--AGGGCUAGC------------UCGG----ACGC- -5'
27619 3' -58.7 NC_005882.1 + 10461 0.66 0.429724
Target:  5'- cGCCGGCCGg-CUCGucaGuGCUUGCGu -3'
miRNA:   3'- -CGGUCGGCaaGGGCuagCuCGGACGC- -5'
27619 3' -58.7 NC_005882.1 + 21276 0.66 0.429724
Target:  5'- gGCCGGCCGcgUCCGAcUCGA-CCUcgGCa -3'
miRNA:   3'- -CGGUCGGCaaGGGCU-AGCUcGGA--CGc -5'
27619 3' -58.7 NC_005882.1 + 23529 0.66 0.429724
Target:  5'- uUCAGCuCGUa--CGGcUCGGGCCUGCGc -3'
miRNA:   3'- cGGUCG-GCAaggGCU-AGCUCGGACGC- -5'
27619 3' -58.7 NC_005882.1 + 25404 0.66 0.420187
Target:  5'- gGCCucGGCCGcgUCgCCGA-CGAGCUgcgcGCGa -3'
miRNA:   3'- -CGG--UCGGCa-AG-GGCUaGCUCGGa---CGC- -5'
27619 3' -58.7 NC_005882.1 + 5989 0.67 0.374489
Target:  5'- aGCCgguAGCCGaugCCCGugCGAacgGCCUGCGc -3'
miRNA:   3'- -CGG---UCGGCaa-GGGCuaGCU---CGGACGC- -5'
27619 3' -58.7 NC_005882.1 + 12621 0.67 0.374489
Target:  5'- cGCCAGCCGccagugCgCCGAUCGccgcagcgccGGCCgccgccGCGa -3'
miRNA:   3'- -CGGUCGGCaa----G-GGCUAGC----------UCGGa-----CGC- -5'
27619 3' -58.7 NC_005882.1 + 12403 0.67 0.348734
Target:  5'- aCCAG-CGUUgCCGAUCGGcGCCgccgGCa -3'
miRNA:   3'- cGGUCgGCAAgGGCUAGCU-CGGa---CGc -5'
27619 3' -58.7 NC_005882.1 + 29511 0.68 0.340434
Target:  5'- cGCaUAGCCGUacUCgCGcgCGAGCC-GCGu -3'
miRNA:   3'- -CG-GUCGGCA--AGgGCuaGCUCGGaCGC- -5'
27619 3' -58.7 NC_005882.1 + 1346 0.68 0.332278
Target:  5'- aGCgGGCCGUg-CCGcUCGAuGUCUGCa -3'
miRNA:   3'- -CGgUCGGCAagGGCuAGCU-CGGACGc -5'
27619 3' -58.7 NC_005882.1 + 20489 0.68 0.332278
Target:  5'- uGCCGGCCGcggugaacUUCUCGGUCGcGCUgaguUGCu -3'
miRNA:   3'- -CGGUCGGC--------AAGGGCUAGCuCGG----ACGc -5'
27619 3' -58.7 NC_005882.1 + 30680 0.68 0.332278
Target:  5'- cGCCAucGCCG--CCCGAUCcGGCCaUGCc -3'
miRNA:   3'- -CGGU--CGGCaaGGGCUAGcUCGG-ACGc -5'
27619 3' -58.7 NC_005882.1 + 27706 0.68 0.3164
Target:  5'- cGCCAGCCGgcgaUCCGcccCGAG-CUGCGu -3'
miRNA:   3'- -CGGUCGGCaa--GGGCua-GCUCgGACGC- -5'
27619 3' -58.7 NC_005882.1 + 12174 0.68 0.315621
Target:  5'- gGCgCAGCCGUucaacccgUCCUGGUCGAuucgugcGCUcgUGCGg -3'
miRNA:   3'- -CG-GUCGGCA--------AGGGCUAGCU-------CGG--ACGC- -5'
27619 3' -58.7 NC_005882.1 + 10192 0.68 0.301101
Target:  5'- uGCgAGCCGcUCCUGggUGAGCUggaguUGCGu -3'
miRNA:   3'- -CGgUCGGCaAGGGCuaGCUCGG-----ACGC- -5'
27619 3' -58.7 NC_005882.1 + 15319 0.69 0.293668
Target:  5'- cGCguGCCGUUCaUCG-UCGAG-CUGCGc -3'
miRNA:   3'- -CGguCGGCAAG-GGCuAGCUCgGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.