miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27619 5' -55 NC_005882.1 + 18974 0.65 0.654275
Target:  5'- cGUCGCGGCgAgGUCcguuUCGGCGAa-- -3'
miRNA:   3'- -CAGCGCCGgUgCAGcu--AGCUGUUgac -5'
27619 5' -55 NC_005882.1 + 15932 0.65 0.654275
Target:  5'- uUCGCGcCCGCGUCgcGAUCuGCGACg- -3'
miRNA:   3'- cAGCGCcGGUGCAG--CUAGcUGUUGac -5'
27619 5' -55 NC_005882.1 + 17251 0.65 0.654275
Target:  5'- -gCGCGuCCGCGUCGAggcUCGgauACAGCUc -3'
miRNA:   3'- caGCGCcGGUGCAGCU---AGC---UGUUGAc -5'
27619 5' -55 NC_005882.1 + 21753 0.65 0.653147
Target:  5'- cGUCGCcgGGCCGCucgggucGcCGAUCGuCAGCUu -3'
miRNA:   3'- -CAGCG--CCGGUG-------CaGCUAGCuGUUGAc -5'
27619 5' -55 NC_005882.1 + 32421 0.65 0.650892
Target:  5'- --aGCGGCgaCAUGUCGAuguugucgaggcgcUCGGcCAACUGg -3'
miRNA:   3'- cagCGCCG--GUGCAGCU--------------AGCU-GUUGAC- -5'
27619 5' -55 NC_005882.1 + 7221 0.66 0.642994
Target:  5'- uGUCGCguugaaucaGGuCCGgGUCGGUgcaaucggcCGGCAACUGg -3'
miRNA:   3'- -CAGCG---------CC-GGUgCAGCUA---------GCUGUUGAC- -5'
27619 5' -55 NC_005882.1 + 28272 0.66 0.642994
Target:  5'- --gGCGGCCGCGcaggCGGUCucCAGCg- -3'
miRNA:   3'- cagCGCCGGUGCa---GCUAGcuGUUGac -5'
27619 5' -55 NC_005882.1 + 11673 0.66 0.642994
Target:  5'- cUCGCGGCCGuCGUCGcguacuggcUCGAUcGCg- -3'
miRNA:   3'- cAGCGCCGGU-GCAGCu--------AGCUGuUGac -5'
27619 5' -55 NC_005882.1 + 26639 0.66 0.642994
Target:  5'- --aGCGGCCccacGCGaCGGUCGcCAGCUc -3'
miRNA:   3'- cagCGCCGG----UGCaGCUAGCuGUUGAc -5'
27619 5' -55 NC_005882.1 + 29870 0.66 0.642994
Target:  5'- --aGCuGGCCgccgguGCGUCGAUCGA--GCUGc -3'
miRNA:   3'- cagCG-CCGG------UGCAGCUAGCUguUGAC- -5'
27619 5' -55 NC_005882.1 + 21266 0.66 0.631702
Target:  5'- aUCGaaCGGCUACGcgcUCGAUgCGGCGACg- -3'
miRNA:   3'- cAGC--GCCGGUGC---AGCUA-GCUGUUGac -5'
27619 5' -55 NC_005882.1 + 35826 0.66 0.609131
Target:  5'- uGUUGCGGUCAgCGUCG--CGAUcGCUGc -3'
miRNA:   3'- -CAGCGCCGGU-GCAGCuaGCUGuUGAC- -5'
27619 5' -55 NC_005882.1 + 13033 0.66 0.597872
Target:  5'- -cCGCaGCCGCGacaUCGAaUCG-CAACUGa -3'
miRNA:   3'- caGCGcCGGUGC---AGCU-AGCuGUUGAC- -5'
27619 5' -55 NC_005882.1 + 1347 0.66 0.597871
Target:  5'- cUCGCGGCCAcCGUUGAggaGAUuuCUc -3'
miRNA:   3'- cAGCGCCGGU-GCAGCUag-CUGuuGAc -5'
27619 5' -55 NC_005882.1 + 1919 0.67 0.586643
Target:  5'- uGUCGCGGUUACG-CG-UUGGCGAUg- -3'
miRNA:   3'- -CAGCGCCGGUGCaGCuAGCUGUUGac -5'
27619 5' -55 NC_005882.1 + 22695 0.67 0.564314
Target:  5'- -cUGC-GCCGCGUCGAcgUCGgacaGCGACUGc -3'
miRNA:   3'- caGCGcCGGUGCAGCU--AGC----UGUUGAC- -5'
27619 5' -55 NC_005882.1 + 25406 0.67 0.553233
Target:  5'- -cCuCGGCCGCGUCGc-CGACgAGCUGc -3'
miRNA:   3'- caGcGCCGGUGCAGCuaGCUG-UUGAC- -5'
27619 5' -55 NC_005882.1 + 14314 0.67 0.542217
Target:  5'- aUCGCgucGGCCGCGUC-AUCgGACAggccGCUGc -3'
miRNA:   3'- cAGCG---CCGGUGCAGcUAG-CUGU----UGAC- -5'
27619 5' -55 NC_005882.1 + 22465 0.67 0.542217
Target:  5'- -gCGCgGGCUugGUCGA-CGGC-GCUGc -3'
miRNA:   3'- caGCG-CCGGugCAGCUaGCUGuUGAC- -5'
27619 5' -55 NC_005882.1 + 21553 0.68 0.531274
Target:  5'- --aGCGGCCGCGcaagugCGcGUCGACGAUUu -3'
miRNA:   3'- cagCGCCGGUGCa-----GC-UAGCUGUUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.