miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2762 3' -58 NC_001491.2 + 147754 0.66 0.842348
Target:  5'- cGCCGuc--CCGGGCCGgGGGGCCgcugcagcGGGCc -3'
miRNA:   3'- -CGGUuccuGGUCCGGU-UCCUGG--------UCCG- -5'
2762 3' -58 NC_001491.2 + 148687 0.66 0.842348
Target:  5'- aGCuCGGGGAUCAGaagcuCCGAGGGCUccacGGCc -3'
miRNA:   3'- -CG-GUUCCUGGUCc----GGUUCCUGGu---CCG- -5'
2762 3' -58 NC_001491.2 + 88446 0.66 0.841545
Target:  5'- -aCGGGGAC--GGCCAAcaggcaagcaagcGGGCCAGGg -3'
miRNA:   3'- cgGUUCCUGguCCGGUU-------------CCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 147483 0.66 0.831766
Target:  5'- gGCCAcccugcgcuugGGGGCCGgagggcugucgaccGGCCccGAGGGaucguacccCCGGGCg -3'
miRNA:   3'- -CGGU-----------UCCUGGU--------------CCGG--UUCCU---------GGUCCG- -5'
2762 3' -58 NC_001491.2 + 115819 0.66 0.825943
Target:  5'- aGCCGGcGGcCCAGGCC--GGAgCCucGGCc -3'
miRNA:   3'- -CGGUU-CCuGGUCCGGuuCCU-GGu-CCG- -5'
2762 3' -58 NC_001491.2 + 148092 0.66 0.817478
Target:  5'- gGCCAGGucCCcGGUCGacagcagcAGGACCcccuGGGCg -3'
miRNA:   3'- -CGGUUCcuGGuCCGGU--------UCCUGG----UCCG- -5'
2762 3' -58 NC_001491.2 + 146430 0.66 0.817478
Target:  5'- aCCGAGGGCgCcgGGGCCucGGGCUguugcuGGCu -3'
miRNA:   3'- cGGUUCCUG-G--UCCGGuuCCUGGu-----CCG- -5'
2762 3' -58 NC_001491.2 + 111191 0.66 0.808848
Target:  5'- uGCCccAGGACCAGcuaGUCGgcgcAGcGCCAGGCu -3'
miRNA:   3'- -CGGu-UCCUGGUC---CGGU----UCcUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 148308 0.66 0.807976
Target:  5'- uGCUggagguGAGGACCGcgcGGCUGagguggcgcucccGGGGCCAGcGCa -3'
miRNA:   3'- -CGG------UUCCUGGU---CCGGU-------------UCCUGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 49148 0.67 0.794716
Target:  5'- aGCCAGGGAgUcGGCCAcugcaucuacaaacuGGGcgcaGCUAGGUu -3'
miRNA:   3'- -CGGUUCCUgGuCCGGU---------------UCC----UGGUCCG- -5'
2762 3' -58 NC_001491.2 + 145460 0.67 0.791124
Target:  5'- aGCCcccggaggGAGGAggccuccucCCGGGCgGcuGGGAgCGGGCg -3'
miRNA:   3'- -CGG--------UUCCU---------GGUCCGgU--UCCUgGUCCG- -5'
2762 3' -58 NC_001491.2 + 118249 0.67 0.790223
Target:  5'- cCCGGGGaacggucGCCGGGCCAcGGGcuccucaucACCcGGCg -3'
miRNA:   3'- cGGUUCC-------UGGUCCGGU-UCC---------UGGuCCG- -5'
2762 3' -58 NC_001491.2 + 105967 0.67 0.771912
Target:  5'- aCCAGGGAcgaCCgAGGCCGAGaaGAaacacgcUCAGGCa -3'
miRNA:   3'- cGGUUCCU---GG-UCCGGUUC--CU-------GGUCCG- -5'
2762 3' -58 NC_001491.2 + 94112 0.67 0.763509
Target:  5'- gGCCGGGuGcACCcGGCCAAcGACCAcGCu -3'
miRNA:   3'- -CGGUUC-C-UGGuCCGGUUcCUGGUcCG- -5'
2762 3' -58 NC_001491.2 + 115119 0.67 0.763509
Target:  5'- aCCGGGGACCuGGCCuuc-ACC-GGCu -3'
miRNA:   3'- cGGUUCCUGGuCCGGuuccUGGuCCG- -5'
2762 3' -58 NC_001491.2 + 140242 0.67 0.754063
Target:  5'- -gCGGGGACgGGGaCGGGGG-CGGGCg -3'
miRNA:   3'- cgGUUCCUGgUCCgGUUCCUgGUCCG- -5'
2762 3' -58 NC_001491.2 + 118040 0.67 0.754063
Target:  5'- -aCGAGGAcgaCCAGGCgGAuGGugCcgGGGCg -3'
miRNA:   3'- cgGUUCCU---GGUCCGgUU-CCugG--UCCG- -5'
2762 3' -58 NC_001491.2 + 339 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 373 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 407 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.