miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2762 3' -58 NC_001491.2 + 118249 0.67 0.790223
Target:  5'- cCCGGGGaacggucGCCGGGCCAcGGGcuccucaucACCcGGCg -3'
miRNA:   3'- cGGUUCC-------UGGUCCGGU-UCC---------UGGuCCG- -5'
2762 3' -58 NC_001491.2 + 105967 0.67 0.771912
Target:  5'- aCCAGGGAcgaCCgAGGCCGAGaaGAaacacgcUCAGGCa -3'
miRNA:   3'- cGGUUCCU---GG-UCCGGUUC--CU-------GGUCCG- -5'
2762 3' -58 NC_001491.2 + 94112 0.67 0.763509
Target:  5'- gGCCGGGuGcACCcGGCCAAcGACCAcGCu -3'
miRNA:   3'- -CGGUUC-C-UGGuCCGGUUcCUGGUcCG- -5'
2762 3' -58 NC_001491.2 + 115119 0.67 0.763509
Target:  5'- aCCGGGGACCuGGCCuuc-ACC-GGCu -3'
miRNA:   3'- cGGUUCCUGGuCCGGuuccUGGuCCG- -5'
2762 3' -58 NC_001491.2 + 17627 0.68 0.705435
Target:  5'- aGUUGAGGuggcccGCCAGGCgCugAAGGAUUAGGCc -3'
miRNA:   3'- -CGGUUCC------UGGUCCG-G--UUCCUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 146648 0.68 0.705435
Target:  5'- cGCUggGGuCCAGuCCGGGGAC--GGCg -3'
miRNA:   3'- -CGGuuCCuGGUCcGGUUCCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 147097 0.68 0.695492
Target:  5'- cCCGGGGACgguGGGCCAcaGGGGCggCAGGg -3'
miRNA:   3'- cGGUUCCUGg--UCCGGU--UCCUG--GUCCg -5'
2762 3' -58 NC_001491.2 + 10657 0.68 0.695492
Target:  5'- aGCCAGGGuCUGcGCUuu-GACCAGGCg -3'
miRNA:   3'- -CGGUUCCuGGUcCGGuucCUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 91606 0.68 0.685497
Target:  5'- aGCCGGGGAgCUGGcGCCGAGuaaacGCgAGGCa -3'
miRNA:   3'- -CGGUUCCU-GGUC-CGGUUCc----UGgUCCG- -5'
2762 3' -58 NC_001491.2 + 148018 0.68 0.685497
Target:  5'- uGCC--GGcCCAGGCguGGGACCGcuuGGUg -3'
miRNA:   3'- -CGGuuCCuGGUCCGguUCCUGGU---CCG- -5'
2762 3' -58 NC_001491.2 + 148747 0.68 0.705435
Target:  5'- aCCAGGGGCUcGGCCucGGcGUCGGGCu -3'
miRNA:   3'- cGGUUCCUGGuCCGGuuCC-UGGUCCG- -5'
2762 3' -58 NC_001491.2 + 117647 0.68 0.71236
Target:  5'- cGCC--GGGCCGGaGCCcucaccggcuccccAAGGACCAGcGUc -3'
miRNA:   3'- -CGGuuCCUGGUC-CGG--------------UUCCUGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 141588 0.68 0.738735
Target:  5'- cCCGcGGGCCcugcgcccguaccuGGcCCGGGGGCCAGGg -3'
miRNA:   3'- cGGUuCCUGGu-------------CC-GGUUCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 146380 0.68 0.725131
Target:  5'- gGCCu-GGGCCGGGUagccGGCCAcGGCg -3'
miRNA:   3'- -CGGuuCCUGGUCCGguucCUGGU-CCG- -5'
2762 3' -58 NC_001491.2 + 49498 0.68 0.725131
Target:  5'- aCCGAGGccgGCCAuGGCCGuugccgccGGGGCCGucccggacgcGGCg -3'
miRNA:   3'- cGGUUCC---UGGU-CCGGU--------UCCUGGU----------CCG- -5'
2762 3' -58 NC_001491.2 + 119402 0.68 0.725131
Target:  5'- aGCgcGGGACCGGGCCccauAGG-CUAGaGCc -3'
miRNA:   3'- -CGguUCCUGGUCCGGu---UCCuGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 2250 0.68 0.724153
Target:  5'- -aCAAGGACCcgagcGGUCGuauGGGACCcaucaaaAGGCg -3'
miRNA:   3'- cgGUUCCUGGu----CCGGU---UCCUGG-------UCCG- -5'
2762 3' -58 NC_001491.2 + 56946 0.68 0.724153
Target:  5'- cGCCAguaucugGGGGCaaaacccgCAGGCCAGGGcuagauaguCCAGGg -3'
miRNA:   3'- -CGGU-------UCCUG--------GUCCGGUUCCu--------GGUCCg -5'
2762 3' -58 NC_001491.2 + 121347 0.69 0.655286
Target:  5'- ----uGGGCUGGGCCGGGGucGCCGGaGCu -3'
miRNA:   3'- cgguuCCUGGUCCGGUUCC--UGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 97387 0.69 0.655286
Target:  5'- aGCCAGGGGCCAGcacCCAGGcacaGCCGcGGUc -3'
miRNA:   3'- -CGGUUCCUGGUCc--GGUUCc---UGGU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.