miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2762 3' -58 NC_001491.2 + 146917 0.83 0.113914
Target:  5'- gGCCuGGGugacgguCCAGGCCGAGGcCCGGGCc -3'
miRNA:   3'- -CGGuUCCu------GGUCCGGUUCCuGGUCCG- -5'
2762 3' -58 NC_001491.2 + 116464 0.83 0.110999
Target:  5'- cUCAGGGACCuGGUCGAgcGGGCCAGGCu -3'
miRNA:   3'- cGGUUCCUGGuCCGGUU--CCUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 145101 0.82 0.129261
Target:  5'- uGCCGGGGACCcuccgcccggggAGGCCGAGGAuggaaacUCGGGCu -3'
miRNA:   3'- -CGGUUCCUGG------------UCCGGUUCCU-------GGUCCG- -5'
2762 3' -58 NC_001491.2 + 148959 0.8 0.175638
Target:  5'- gGCgGAGGGCCuGGGCCAcgccGGGGCuCGGGCc -3'
miRNA:   3'- -CGgUUCCUGG-UCCGGU----UCCUG-GUCCG- -5'
2762 3' -58 NC_001491.2 + 114695 0.78 0.219225
Target:  5'- -gCAAGGAcaugcgggcCCAGGCCGAGGGCCucGGGUu -3'
miRNA:   3'- cgGUUCCU---------GGUCCGGUUCCUGG--UCCG- -5'
2762 3' -58 NC_001491.2 + 121381 0.76 0.291337
Target:  5'- cGCCGGagcuGGGCUGGGCCGGGGucGCCGGaGCu -3'
miRNA:   3'- -CGGUU----CCUGGUCCGGUUCC--UGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 116327 0.76 0.278138
Target:  5'- cGCCGAGGGggcCCGGGCCc-GGGCCucGGCc -3'
miRNA:   3'- -CGGUUCCU---GGUCCGGuuCCUGGu-CCG- -5'
2762 3' -58 NC_001491.2 + 65484 0.75 0.356756
Target:  5'- cGCCAcAGGuGCCA-GCCGGGGAagccCCGGGCa -3'
miRNA:   3'- -CGGU-UCC-UGGUcCGGUUCCU----GGUCCG- -5'
2762 3' -58 NC_001491.2 + 102114 0.74 0.397317
Target:  5'- -aCGAGGACCucGCCAAGGAUU-GGCa -3'
miRNA:   3'- cgGUUCCUGGucCGGUUCCUGGuCCG- -5'
2762 3' -58 NC_001491.2 + 112998 0.74 0.38074
Target:  5'- uGCgGGGGugagACgCGGGCUggGGGGGCCAGGCu -3'
miRNA:   3'- -CGgUUCC----UG-GUCCGG--UUCCUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 10942 0.73 0.423034
Target:  5'- uGCCuGGGGAuCCAGGCCGAGGGucuucuCCAGcacaGCa -3'
miRNA:   3'- -CGG-UUCCU-GGUCCGGUUCCU------GGUC----CG- -5'
2762 3' -58 NC_001491.2 + 101407 0.73 0.431826
Target:  5'- gGCaggaaaAAGGACgAGGCCcAGGGCCcuGGGUg -3'
miRNA:   3'- -CGg-----UUCCUGgUCCGGuUCCUGG--UCCG- -5'
2762 3' -58 NC_001491.2 + 116708 0.73 0.431826
Target:  5'- uGCCGcGG-CCGcGGCCGcuccgGGGACCAGGg -3'
miRNA:   3'- -CGGUuCCuGGU-CCGGU-----UCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 45191 0.71 0.515349
Target:  5'- gGCCGcggcgGGGGCCGccgcagauuuGGCC-GGGGCCGcGGCg -3'
miRNA:   3'- -CGGU-----UCCUGGU----------CCGGuUCCUGGU-CCG- -5'
2762 3' -58 NC_001491.2 + 45125 0.71 0.515349
Target:  5'- gGCCGcggcgGGGGCCGccgcagauuuGGCC-GGGGCCGcGGCg -3'
miRNA:   3'- -CGGU-----UCCUGGU----------CCGGuUCCUGGU-CCG- -5'
2762 3' -58 NC_001491.2 + 147920 0.71 0.515349
Target:  5'- cGCCGAGaGccGCCGGGgCGGGaGGCCGGGa -3'
miRNA:   3'- -CGGUUC-C--UGGUCCgGUUC-CUGGUCCg -5'
2762 3' -58 NC_001491.2 + 146767 0.71 0.525052
Target:  5'- cCCGAGGAgCCuGGCCcgcucGACCAGGUc -3'
miRNA:   3'- cGGUUCCU-GGuCCGGuuc--CUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 45257 0.71 0.515349
Target:  5'- gGCCGcggcgGGGGCCGccgcagauuuGGCC-GGGGCCGcGGCg -3'
miRNA:   3'- -CGGU-----UCCUGGU----------CCGGuUCCUGGU-CCG- -5'
2762 3' -58 NC_001491.2 + 121506 0.71 0.534823
Target:  5'- cGCCGGGGGCgaggGGGUCAGGGACgGGa- -3'
miRNA:   3'- -CGGUUCCUGg---UCCGGUUCCUGgUCcg -5'
2762 3' -58 NC_001491.2 + 97062 0.71 0.564495
Target:  5'- cGCUAGGGGCUAGGUCu---GCCAGcGCg -3'
miRNA:   3'- -CGGUUCCUGGUCCGGuuccUGGUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.