Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2762 | 3' | -58 | NC_001491.2 | + | 116464 | 0.83 | 0.110999 |
Target: 5'- cUCAGGGACCuGGUCGAgcGGGCCAGGCu -3' miRNA: 3'- cGGUUCCUGGuCCGGUU--CCUGGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 146917 | 0.83 | 0.113914 |
Target: 5'- gGCCuGGGugacgguCCAGGCCGAGGcCCGGGCc -3' miRNA: 3'- -CGGuUCCu------GGUCCGGUUCCuGGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 145101 | 0.82 | 0.129261 |
Target: 5'- uGCCGGGGACCcuccgcccggggAGGCCGAGGAuggaaacUCGGGCu -3' miRNA: 3'- -CGGUUCCUGG------------UCCGGUUCCU-------GGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 148959 | 0.8 | 0.175638 |
Target: 5'- gGCgGAGGGCCuGGGCCAcgccGGGGCuCGGGCc -3' miRNA: 3'- -CGgUUCCUGG-UCCGGU----UCCUG-GUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 114695 | 0.78 | 0.219225 |
Target: 5'- -gCAAGGAcaugcgggcCCAGGCCGAGGGCCucGGGUu -3' miRNA: 3'- cgGUUCCU---------GGUCCGGUUCCUGG--UCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 116327 | 0.76 | 0.278138 |
Target: 5'- cGCCGAGGGggcCCGGGCCc-GGGCCucGGCc -3' miRNA: 3'- -CGGUUCCU---GGUCCGGuuCCUGGu-CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 121381 | 0.76 | 0.291337 |
Target: 5'- cGCCGGagcuGGGCUGGGCCGGGGucGCCGGaGCu -3' miRNA: 3'- -CGGUU----CCUGGUCCGGUUCC--UGGUC-CG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 65484 | 0.75 | 0.356756 |
Target: 5'- cGCCAcAGGuGCCA-GCCGGGGAagccCCGGGCa -3' miRNA: 3'- -CGGU-UCC-UGGUcCGGUUCCU----GGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 112998 | 0.74 | 0.38074 |
Target: 5'- uGCgGGGGugagACgCGGGCUggGGGGGCCAGGCu -3' miRNA: 3'- -CGgUUCC----UG-GUCCGG--UUCCUGGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 102114 | 0.74 | 0.397317 |
Target: 5'- -aCGAGGACCucGCCAAGGAUU-GGCa -3' miRNA: 3'- cgGUUCCUGGucCGGUUCCUGGuCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 10942 | 0.73 | 0.423034 |
Target: 5'- uGCCuGGGGAuCCAGGCCGAGGGucuucuCCAGcacaGCa -3' miRNA: 3'- -CGG-UUCCU-GGUCCGGUUCCU------GGUC----CG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 116708 | 0.73 | 0.431826 |
Target: 5'- uGCCGcGG-CCGcGGCCGcuccgGGGACCAGGg -3' miRNA: 3'- -CGGUuCCuGGU-CCGGU-----UCCUGGUCCg -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 101407 | 0.73 | 0.431826 |
Target: 5'- gGCaggaaaAAGGACgAGGCCcAGGGCCcuGGGUg -3' miRNA: 3'- -CGg-----UUCCUGgUCCGGuUCCUGG--UCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 147920 | 0.71 | 0.515349 |
Target: 5'- cGCCGAGaGccGCCGGGgCGGGaGGCCGGGa -3' miRNA: 3'- -CGGUUC-C--UGGUCCgGUUC-CUGGUCCg -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 45191 | 0.71 | 0.515349 |
Target: 5'- gGCCGcggcgGGGGCCGccgcagauuuGGCC-GGGGCCGcGGCg -3' miRNA: 3'- -CGGU-----UCCUGGU----------CCGGuUCCUGGU-CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 45125 | 0.71 | 0.515349 |
Target: 5'- gGCCGcggcgGGGGCCGccgcagauuuGGCC-GGGGCCGcGGCg -3' miRNA: 3'- -CGGU-----UCCUGGU----------CCGGuUCCUGGU-CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 45257 | 0.71 | 0.515349 |
Target: 5'- gGCCGcggcgGGGGCCGccgcagauuuGGCC-GGGGCCGcGGCg -3' miRNA: 3'- -CGGU-----UCCUGGU----------CCGGuUCCUGGU-CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 146767 | 0.71 | 0.525052 |
Target: 5'- cCCGAGGAgCCuGGCCcgcucGACCAGGUc -3' miRNA: 3'- cGGUUCCU-GGuCCGGuuc--CUGGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 121506 | 0.71 | 0.534823 |
Target: 5'- cGCCGGGGGCgaggGGGUCAGGGACgGGa- -3' miRNA: 3'- -CGGUUCCUGg---UCCGGUUCCUGgUCcg -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 115671 | 0.71 | 0.534823 |
Target: 5'- aGCCGAGGGCCccGaCCGucGGGGCggauuCAGGCg -3' miRNA: 3'- -CGGUUCCUGGucC-GGU--UCCUG-----GUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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