miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2762 3' -58 NC_001491.2 + 97062 0.71 0.564495
Target:  5'- cGCUAGGGGCUAGGUCu---GCCAGcGCg -3'
miRNA:   3'- -CGGUUCCUGGUCCGGuuccUGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 140383 0.7 0.574486
Target:  5'- cGCCGAGGAaauaCAGcucGCgGAGGGCCGcGCg -3'
miRNA:   3'- -CGGUUCCUg---GUC---CGgUUCCUGGUcCG- -5'
2762 3' -58 NC_001491.2 + 147711 0.7 0.578494
Target:  5'- gGCC-AGGGCCuggggaucgaaggugAGcGCCGGGcGCCAGGCc -3'
miRNA:   3'- -CGGuUCCUGG---------------UC-CGGUUCcUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 147405 0.7 0.594582
Target:  5'- gGCCGAGGcuCC-GGCCu-GGGCCGccGGCu -3'
miRNA:   3'- -CGGUUCCu-GGuCCGGuuCCUGGU--CCG- -5'
2762 3' -58 NC_001491.2 + 121670 0.7 0.604674
Target:  5'- cGCCAcggcGGGGCgCAgaacgccccuGGCCcccGGGCCAGGUa -3'
miRNA:   3'- -CGGU----UCCUG-GU----------CCGGuu-CCUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 112455 0.7 0.614786
Target:  5'- gGCaGGGGGCUAGGgCAgGGGGCUAGGg -3'
miRNA:   3'- -CGgUUCCUGGUCCgGU-UCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 147261 0.7 0.614786
Target:  5'- cGCCugagGGGAgCGGGCCuucuGcGGCUGGGCu -3'
miRNA:   3'- -CGGu---UCCUgGUCCGGuu--C-CUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 112429 0.7 0.614786
Target:  5'- gGCaGGGGGCUAGGgCAgGGGGCUAGGg -3'
miRNA:   3'- -CGgUUCCUGGUCCgGU-UCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 112481 0.7 0.614786
Target:  5'- gGCaGGGGGCUAGGgCAgGGGGCUAGGg -3'
miRNA:   3'- -CGgUUCCUGGUCCgGU-UCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 112507 0.7 0.614786
Target:  5'- gGCaGGGGGCUAGGgCAgGGGGCUAGGg -3'
miRNA:   3'- -CGgUUCCUGGUCCgGU-UCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 28824 0.7 0.62491
Target:  5'- cUCAAGGACguGGCCAAGcucacGCC-GGCc -3'
miRNA:   3'- cGGUUCCUGguCCGGUUCc----UGGuCCG- -5'
2762 3' -58 NC_001491.2 + 115192 0.69 0.63504
Target:  5'- cGCCu-GGGCC-GGCaacuGGACCGGGg -3'
miRNA:   3'- -CGGuuCCUGGuCCGguu-CCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 115726 0.69 0.63504
Target:  5'- aGCgCAGGGuggccaccCCGGGCCAccAGGcuccCCGGGCc -3'
miRNA:   3'- -CG-GUUCCu-------GGUCCGGU--UCCu---GGUCCG- -5'
2762 3' -58 NC_001491.2 + 100887 0.69 0.63504
Target:  5'- cGCCAAGu-CCGGcGCgGgAGGACuCGGGCa -3'
miRNA:   3'- -CGGUUCcuGGUC-CGgU-UCCUG-GUCCG- -5'
2762 3' -58 NC_001491.2 + 1272 0.69 0.63504
Target:  5'- -aUggGGGCCAGGCUcucucucGGGCgCGGGCc -3'
miRNA:   3'- cgGuuCCUGGUCCGGuu-----CCUG-GUCCG- -5'
2762 3' -58 NC_001491.2 + 144911 0.69 0.63504
Target:  5'- aGCCccGGAgCCGGGCUggGuGCCGGGg -3'
miRNA:   3'- -CGGuuCCU-GGUCCGGuuCcUGGUCCg -5'
2762 3' -58 NC_001491.2 + 122889 0.69 0.645168
Target:  5'- uGCCGuuguGGuuCAguGGCCGGGaGAUCGGGCg -3'
miRNA:   3'- -CGGUu---CCugGU--CCGGUUC-CUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 107736 0.69 0.654274
Target:  5'- aUCGuGGGCCAGGauccguaCCAcgcgccGGGCCAGGCg -3'
miRNA:   3'- cGGUuCCUGGUCC-------GGUu-----CCUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 121347 0.69 0.655286
Target:  5'- ----uGGGCUGGGCCGGGGucGCCGGaGCu -3'
miRNA:   3'- cgguuCCUGGUCCGGUUCC--UGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 97387 0.69 0.655286
Target:  5'- aGCCAGGGGCCAGcacCCAGGcacaGCCGcGGUc -3'
miRNA:   3'- -CGGUUCCUGGUCc--GGUUCc---UGGU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.