Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2762 | 3' | -58 | NC_001491.2 | + | 407 | 0.67 | 0.744512 |
Target: 5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3' miRNA: 3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 373 | 0.67 | 0.744512 |
Target: 5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3' miRNA: 3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 339 | 0.67 | 0.744512 |
Target: 5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3' miRNA: 3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 305 | 0.67 | 0.744512 |
Target: 5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3' miRNA: 3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 141588 | 0.68 | 0.738735 |
Target: 5'- cCCGcGGGCCcugcgcccguaccuGGcCCGGGGGCCAGGg -3' miRNA: 3'- cGGUuCCUGGu-------------CC-GGUUCCUGGUCCg -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 119402 | 0.68 | 0.725131 |
Target: 5'- aGCgcGGGACCGGGCCccauAGG-CUAGaGCc -3' miRNA: 3'- -CGguUCCUGGUCCGGu---UCCuGGUC-CG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 49498 | 0.68 | 0.725131 |
Target: 5'- aCCGAGGccgGCCAuGGCCGuugccgccGGGGCCGucccggacgcGGCg -3' miRNA: 3'- cGGUUCC---UGGU-CCGGU--------UCCUGGU----------CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 146380 | 0.68 | 0.725131 |
Target: 5'- gGCCu-GGGCCGGGUagccGGCCAcGGCg -3' miRNA: 3'- -CGGuuCCUGGUCCGguucCUGGU-CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 2250 | 0.68 | 0.724153 |
Target: 5'- -aCAAGGACCcgagcGGUCGuauGGGACCcaucaaaAGGCg -3' miRNA: 3'- cgGUUCCUGGu----CCGGU---UCCUGG-------UCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 56946 | 0.68 | 0.724153 |
Target: 5'- cGCCAguaucugGGGGCaaaacccgCAGGCCAGGGcuagauaguCCAGGg -3' miRNA: 3'- -CGGU-------UCCUG--------GUCCGGUUCCu--------GGUCCg -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 117647 | 0.68 | 0.71236 |
Target: 5'- cGCC--GGGCCGGaGCCcucaccggcuccccAAGGACCAGcGUc -3' miRNA: 3'- -CGGuuCCUGGUC-CGG--------------UUCCUGGUC-CG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 146648 | 0.68 | 0.705435 |
Target: 5'- cGCUggGGuCCAGuCCGGGGAC--GGCg -3' miRNA: 3'- -CGGuuCCuGGUCcGGUUCCUGguCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 17627 | 0.68 | 0.705435 |
Target: 5'- aGUUGAGGuggcccGCCAGGCgCugAAGGAUUAGGCc -3' miRNA: 3'- -CGGUUCC------UGGUCCG-G--UUCCUGGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 148747 | 0.68 | 0.705435 |
Target: 5'- aCCAGGGGCUcGGCCucGGcGUCGGGCu -3' miRNA: 3'- cGGUUCCUGGuCCGGuuCC-UGGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 147097 | 0.68 | 0.695492 |
Target: 5'- cCCGGGGACgguGGGCCAcaGGGGCggCAGGg -3' miRNA: 3'- cGGUUCCUGg--UCCGGU--UCCUG--GUCCg -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 10657 | 0.68 | 0.695492 |
Target: 5'- aGCCAGGGuCUGcGCUuu-GACCAGGCg -3' miRNA: 3'- -CGGUUCCuGGUcCGGuucCUGGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 91606 | 0.68 | 0.685497 |
Target: 5'- aGCCGGGGAgCUGGcGCCGAGuaaacGCgAGGCa -3' miRNA: 3'- -CGGUUCCU-GGUC-CGGUUCc----UGgUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 148018 | 0.68 | 0.685497 |
Target: 5'- uGCC--GGcCCAGGCguGGGACCGcuuGGUg -3' miRNA: 3'- -CGGuuCCuGGUCCGguUCCUGGU---CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 142346 | 0.69 | 0.665385 |
Target: 5'- uGCgAAcGGGCCucuGGGCCAaucaGGGugCAGGa -3' miRNA: 3'- -CGgUU-CCUGG---UCCGGU----UCCugGUCCg -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 97387 | 0.69 | 0.655286 |
Target: 5'- aGCCAGGGGCCAGcacCCAGGcacaGCCGcGGUc -3' miRNA: 3'- -CGGUUCCUGGUCc--GGUUCc---UGGU-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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