Results 41 - 60 of 79 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2762 | 3' | -58 | NC_001491.2 | + | 97387 | 0.69 | 0.655286 |
Target: 5'- aGCCAGGGGCCAGcacCCAGGcacaGCCGcGGUc -3' miRNA: 3'- -CGGUUCCUGGUCc--GGUUCc---UGGU-CCG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 107736 | 0.69 | 0.654274 |
Target: 5'- aUCGuGGGCCAGGauccguaCCAcgcgccGGGCCAGGCg -3' miRNA: 3'- cGGUuCCUGGUCC-------GGUu-----CCUGGUCCG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 122889 | 0.69 | 0.645168 |
Target: 5'- uGCCGuuguGGuuCAguGGCCGGGaGAUCGGGCg -3' miRNA: 3'- -CGGUu---CCugGU--CCGGUUC-CUGGUCCG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 115726 | 0.69 | 0.63504 |
Target: 5'- aGCgCAGGGuggccaccCCGGGCCAccAGGcuccCCGGGCc -3' miRNA: 3'- -CG-GUUCCu-------GGUCCGGU--UCCu---GGUCCG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 144911 | 0.69 | 0.63504 |
Target: 5'- aGCCccGGAgCCGGGCUggGuGCCGGGg -3' miRNA: 3'- -CGGuuCCU-GGUCCGGuuCcUGGUCCg -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 100887 | 0.69 | 0.63504 |
Target: 5'- cGCCAAGu-CCGGcGCgGgAGGACuCGGGCa -3' miRNA: 3'- -CGGUUCcuGGUC-CGgU-UCCUG-GUCCG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 1272 | 0.69 | 0.63504 |
Target: 5'- -aUggGGGCCAGGCUcucucucGGGCgCGGGCc -3' miRNA: 3'- cgGuuCCUGGUCCGGuu-----CCUG-GUCCG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 115192 | 0.69 | 0.63504 |
Target: 5'- cGCCu-GGGCC-GGCaacuGGACCGGGg -3' miRNA: 3'- -CGGuuCCUGGuCCGguu-CCUGGUCCg -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 28824 | 0.7 | 0.62491 |
Target: 5'- cUCAAGGACguGGCCAAGcucacGCC-GGCc -3' miRNA: 3'- cGGUUCCUGguCCGGUUCc----UGGuCCG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 112507 | 0.7 | 0.614786 |
Target: 5'- gGCaGGGGGCUAGGgCAgGGGGCUAGGg -3' miRNA: 3'- -CGgUUCCUGGUCCgGU-UCCUGGUCCg -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 112481 | 0.7 | 0.614786 |
Target: 5'- gGCaGGGGGCUAGGgCAgGGGGCUAGGg -3' miRNA: 3'- -CGgUUCCUGGUCCgGU-UCCUGGUCCg -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 112455 | 0.7 | 0.614786 |
Target: 5'- gGCaGGGGGCUAGGgCAgGGGGCUAGGg -3' miRNA: 3'- -CGgUUCCUGGUCCgGU-UCCUGGUCCg -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 112429 | 0.7 | 0.614786 |
Target: 5'- gGCaGGGGGCUAGGgCAgGGGGCUAGGg -3' miRNA: 3'- -CGgUUCCUGGUCCgGU-UCCUGGUCCg -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 147261 | 0.7 | 0.614786 |
Target: 5'- cGCCugagGGGAgCGGGCCuucuGcGGCUGGGCu -3' miRNA: 3'- -CGGu---UCCUgGUCCGGuu--C-CUGGUCCG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 121670 | 0.7 | 0.604674 |
Target: 5'- cGCCAcggcGGGGCgCAgaacgccccuGGCCcccGGGCCAGGUa -3' miRNA: 3'- -CGGU----UCCUG-GU----------CCGGuu-CCUGGUCCG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 147405 | 0.7 | 0.594582 |
Target: 5'- gGCCGAGGcuCC-GGCCu-GGGCCGccGGCu -3' miRNA: 3'- -CGGUUCCu-GGuCCGGuuCCUGGU--CCG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 147711 | 0.7 | 0.578494 |
Target: 5'- gGCC-AGGGCCuggggaucgaaggugAGcGCCGGGcGCCAGGCc -3' miRNA: 3'- -CGGuUCCUGG---------------UC-CGGUUCcUGGUCCG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 140383 | 0.7 | 0.574486 |
Target: 5'- cGCCGAGGAaauaCAGcucGCgGAGGGCCGcGCg -3' miRNA: 3'- -CGGUUCCUg---GUC---CGgUUCCUGGUcCG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 97062 | 0.71 | 0.564495 |
Target: 5'- cGCUAGGGGCUAGGUCu---GCCAGcGCg -3' miRNA: 3'- -CGGUUCCUGGUCCGGuuccUGGUC-CG- -5' |
|||||||
2762 | 3' | -58 | NC_001491.2 | + | 121506 | 0.71 | 0.534823 |
Target: 5'- cGCCGGGGGCgaggGGGUCAGGGACgGGa- -3' miRNA: 3'- -CGGUUCCUGg---UCCGGUUCCUGgUCcg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home