miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2762 3' -58 NC_001491.2 + 305 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 339 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 373 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 407 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 441 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 475 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 1272 0.69 0.63504
Target:  5'- -aUggGGGCCAGGCUcucucucGGGCgCGGGCc -3'
miRNA:   3'- cgGuuCCUGGUCCGGuu-----CCUG-GUCCG- -5'
2762 3' -58 NC_001491.2 + 2250 0.68 0.724153
Target:  5'- -aCAAGGACCcgagcGGUCGuauGGGACCcaucaaaAGGCg -3'
miRNA:   3'- cgGUUCCUGGu----CCGGU---UCCUGG-------UCCG- -5'
2762 3' -58 NC_001491.2 + 10657 0.68 0.695492
Target:  5'- aGCCAGGGuCUGcGCUuu-GACCAGGCg -3'
miRNA:   3'- -CGGUUCCuGGUcCGGuucCUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 10942 0.73 0.423034
Target:  5'- uGCCuGGGGAuCCAGGCCGAGGGucuucuCCAGcacaGCa -3'
miRNA:   3'- -CGG-UUCCU-GGUCCGGUUCCU------GGUC----CG- -5'
2762 3' -58 NC_001491.2 + 17627 0.68 0.705435
Target:  5'- aGUUGAGGuggcccGCCAGGCgCugAAGGAUUAGGCc -3'
miRNA:   3'- -CGGUUCC------UGGUCCG-G--UUCCUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 28824 0.7 0.62491
Target:  5'- cUCAAGGACguGGCCAAGcucacGCC-GGCc -3'
miRNA:   3'- cGGUUCCUGguCCGGUUCc----UGGuCCG- -5'
2762 3' -58 NC_001491.2 + 45125 0.71 0.515349
Target:  5'- gGCCGcggcgGGGGCCGccgcagauuuGGCC-GGGGCCGcGGCg -3'
miRNA:   3'- -CGGU-----UCCUGGU----------CCGGuUCCUGGU-CCG- -5'
2762 3' -58 NC_001491.2 + 45191 0.71 0.515349
Target:  5'- gGCCGcggcgGGGGCCGccgcagauuuGGCC-GGGGCCGcGGCg -3'
miRNA:   3'- -CGGU-----UCCUGGU----------CCGGuUCCUGGU-CCG- -5'
2762 3' -58 NC_001491.2 + 45257 0.71 0.515349
Target:  5'- gGCCGcggcgGGGGCCGccgcagauuuGGCC-GGGGCCGcGGCg -3'
miRNA:   3'- -CGGU-----UCCUGGU----------CCGGuUCCUGGU-CCG- -5'
2762 3' -58 NC_001491.2 + 49148 0.67 0.794716
Target:  5'- aGCCAGGGAgUcGGCCAcugcaucuacaaacuGGGcgcaGCUAGGUu -3'
miRNA:   3'- -CGGUUCCUgGuCCGGU---------------UCC----UGGUCCG- -5'
2762 3' -58 NC_001491.2 + 49498 0.68 0.725131
Target:  5'- aCCGAGGccgGCCAuGGCCGuugccgccGGGGCCGucccggacgcGGCg -3'
miRNA:   3'- cGGUUCC---UGGU-CCGGU--------UCCUGGU----------CCG- -5'
2762 3' -58 NC_001491.2 + 56946 0.68 0.724153
Target:  5'- cGCCAguaucugGGGGCaaaacccgCAGGCCAGGGcuagauaguCCAGGg -3'
miRNA:   3'- -CGGU-------UCCUG--------GUCCGGUUCCu--------GGUCCg -5'
2762 3' -58 NC_001491.2 + 65484 0.75 0.356756
Target:  5'- cGCCAcAGGuGCCA-GCCGGGGAagccCCGGGCa -3'
miRNA:   3'- -CGGU-UCC-UGGUcCGGUUCCU----GGUCCG- -5'
2762 3' -58 NC_001491.2 + 88446 0.66 0.841545
Target:  5'- -aCGGGGAC--GGCCAAcaggcaagcaagcGGGCCAGGg -3'
miRNA:   3'- cgGUUCCUGguCCGGUU-------------CCUGGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.