miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2762 3' -58 NC_001491.2 + 91606 0.68 0.685497
Target:  5'- aGCCGGGGAgCUGGcGCCGAGuaaacGCgAGGCa -3'
miRNA:   3'- -CGGUUCCU-GGUC-CGGUUCc----UGgUCCG- -5'
2762 3' -58 NC_001491.2 + 94112 0.67 0.763509
Target:  5'- gGCCGGGuGcACCcGGCCAAcGACCAcGCu -3'
miRNA:   3'- -CGGUUC-C-UGGuCCGGUUcCUGGUcCG- -5'
2762 3' -58 NC_001491.2 + 97062 0.71 0.564495
Target:  5'- cGCUAGGGGCUAGGUCu---GCCAGcGCg -3'
miRNA:   3'- -CGGUUCCUGGUCCGGuuccUGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 97387 0.69 0.655286
Target:  5'- aGCCAGGGGCCAGcacCCAGGcacaGCCGcGGUc -3'
miRNA:   3'- -CGGUUCCUGGUCc--GGUUCc---UGGU-CCG- -5'
2762 3' -58 NC_001491.2 + 100887 0.69 0.63504
Target:  5'- cGCCAAGu-CCGGcGCgGgAGGACuCGGGCa -3'
miRNA:   3'- -CGGUUCcuGGUC-CGgU-UCCUG-GUCCG- -5'
2762 3' -58 NC_001491.2 + 101407 0.73 0.431826
Target:  5'- gGCaggaaaAAGGACgAGGCCcAGGGCCcuGGGUg -3'
miRNA:   3'- -CGg-----UUCCUGgUCCGGuUCCUGG--UCCG- -5'
2762 3' -58 NC_001491.2 + 102114 0.74 0.397317
Target:  5'- -aCGAGGACCucGCCAAGGAUU-GGCa -3'
miRNA:   3'- cgGUUCCUGGucCGGUUCCUGGuCCG- -5'
2762 3' -58 NC_001491.2 + 105967 0.67 0.771912
Target:  5'- aCCAGGGAcgaCCgAGGCCGAGaaGAaacacgcUCAGGCa -3'
miRNA:   3'- cGGUUCCU---GG-UCCGGUUC--CU-------GGUCCG- -5'
2762 3' -58 NC_001491.2 + 107736 0.69 0.654274
Target:  5'- aUCGuGGGCCAGGauccguaCCAcgcgccGGGCCAGGCg -3'
miRNA:   3'- cGGUuCCUGGUCC-------GGUu-----CCUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 111191 0.66 0.808848
Target:  5'- uGCCccAGGACCAGcuaGUCGgcgcAGcGCCAGGCu -3'
miRNA:   3'- -CGGu-UCCUGGUC---CGGU----UCcUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 112429 0.7 0.614786
Target:  5'- gGCaGGGGGCUAGGgCAgGGGGCUAGGg -3'
miRNA:   3'- -CGgUUCCUGGUCCgGU-UCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 112455 0.7 0.614786
Target:  5'- gGCaGGGGGCUAGGgCAgGGGGCUAGGg -3'
miRNA:   3'- -CGgUUCCUGGUCCgGU-UCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 112481 0.7 0.614786
Target:  5'- gGCaGGGGGCUAGGgCAgGGGGCUAGGg -3'
miRNA:   3'- -CGgUUCCUGGUCCgGU-UCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 112507 0.7 0.614786
Target:  5'- gGCaGGGGGCUAGGgCAgGGGGCUAGGg -3'
miRNA:   3'- -CGgUUCCUGGUCCgGU-UCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 112998 0.74 0.38074
Target:  5'- uGCgGGGGugagACgCGGGCUggGGGGGCCAGGCu -3'
miRNA:   3'- -CGgUUCC----UG-GUCCGG--UUCCUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 114695 0.78 0.219225
Target:  5'- -gCAAGGAcaugcgggcCCAGGCCGAGGGCCucGGGUu -3'
miRNA:   3'- cgGUUCCU---------GGUCCGGUUCCUGG--UCCG- -5'
2762 3' -58 NC_001491.2 + 115119 0.67 0.763509
Target:  5'- aCCGGGGACCuGGCCuuc-ACC-GGCu -3'
miRNA:   3'- cGGUUCCUGGuCCGGuuccUGGuCCG- -5'
2762 3' -58 NC_001491.2 + 115192 0.69 0.63504
Target:  5'- cGCCu-GGGCC-GGCaacuGGACCGGGg -3'
miRNA:   3'- -CGGuuCCUGGuCCGguu-CCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 115671 0.71 0.534823
Target:  5'- aGCCGAGGGCCccGaCCGucGGGGCggauuCAGGCg -3'
miRNA:   3'- -CGGUUCCUGGucC-GGU--UCCUG-----GUCCG- -5'
2762 3' -58 NC_001491.2 + 115726 0.69 0.63504
Target:  5'- aGCgCAGGGuggccaccCCGGGCCAccAGGcuccCCGGGCc -3'
miRNA:   3'- -CG-GUUCCu-------GGUCCGGU--UCCu---GGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.