miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2762 3' -58 NC_001491.2 + 115819 0.66 0.825943
Target:  5'- aGCCGGcGGcCCAGGCC--GGAgCCucGGCc -3'
miRNA:   3'- -CGGUU-CCuGGUCCGGuuCCU-GGu-CCG- -5'
2762 3' -58 NC_001491.2 + 116327 0.76 0.278138
Target:  5'- cGCCGAGGGggcCCGGGCCc-GGGCCucGGCc -3'
miRNA:   3'- -CGGUUCCU---GGUCCGGuuCCUGGu-CCG- -5'
2762 3' -58 NC_001491.2 + 116464 0.83 0.110999
Target:  5'- cUCAGGGACCuGGUCGAgcGGGCCAGGCu -3'
miRNA:   3'- cGGUUCCUGGuCCGGUU--CCUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 116708 0.73 0.431826
Target:  5'- uGCCGcGG-CCGcGGCCGcuccgGGGACCAGGg -3'
miRNA:   3'- -CGGUuCCuGGU-CCGGU-----UCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 117647 0.68 0.71236
Target:  5'- cGCC--GGGCCGGaGCCcucaccggcuccccAAGGACCAGcGUc -3'
miRNA:   3'- -CGGuuCCUGGUC-CGG--------------UUCCUGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 118040 0.67 0.754063
Target:  5'- -aCGAGGAcgaCCAGGCgGAuGGugCcgGGGCg -3'
miRNA:   3'- cgGUUCCU---GGUCCGgUU-CCugG--UCCG- -5'
2762 3' -58 NC_001491.2 + 118249 0.67 0.790223
Target:  5'- cCCGGGGaacggucGCCGGGCCAcGGGcuccucaucACCcGGCg -3'
miRNA:   3'- cGGUUCC-------UGGUCCGGU-UCC---------UGGuCCG- -5'
2762 3' -58 NC_001491.2 + 119402 0.68 0.725131
Target:  5'- aGCgcGGGACCGGGCCccauAGG-CUAGaGCc -3'
miRNA:   3'- -CGguUCCUGGUCCGGu---UCCuGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 121347 0.69 0.655286
Target:  5'- ----uGGGCUGGGCCGGGGucGCCGGaGCu -3'
miRNA:   3'- cgguuCCUGGUCCGGUUCC--UGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 121381 0.76 0.291337
Target:  5'- cGCCGGagcuGGGCUGGGCCGGGGucGCCGGaGCu -3'
miRNA:   3'- -CGGUU----CCUGGUCCGGUUCC--UGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 121506 0.71 0.534823
Target:  5'- cGCCGGGGGCgaggGGGUCAGGGACgGGa- -3'
miRNA:   3'- -CGGUUCCUGg---UCCGGUUCCUGgUCcg -5'
2762 3' -58 NC_001491.2 + 121670 0.7 0.604674
Target:  5'- cGCCAcggcGGGGCgCAgaacgccccuGGCCcccGGGCCAGGUa -3'
miRNA:   3'- -CGGU----UCCUG-GU----------CCGGuu-CCUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 122889 0.69 0.645168
Target:  5'- uGCCGuuguGGuuCAguGGCCGGGaGAUCGGGCg -3'
miRNA:   3'- -CGGUu---CCugGU--CCGGUUC-CUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 140242 0.67 0.754063
Target:  5'- -gCGGGGACgGGGaCGGGGG-CGGGCg -3'
miRNA:   3'- cgGUUCCUGgUCCgGUUCCUgGUCCG- -5'
2762 3' -58 NC_001491.2 + 140383 0.7 0.574486
Target:  5'- cGCCGAGGAaauaCAGcucGCgGAGGGCCGcGCg -3'
miRNA:   3'- -CGGUUCCUg---GUC---CGgUUCCUGGUcCG- -5'
2762 3' -58 NC_001491.2 + 141588 0.68 0.738735
Target:  5'- cCCGcGGGCCcugcgcccguaccuGGcCCGGGGGCCAGGg -3'
miRNA:   3'- cGGUuCCUGGu-------------CC-GGUUCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 142346 0.69 0.665385
Target:  5'- uGCgAAcGGGCCucuGGGCCAaucaGGGugCAGGa -3'
miRNA:   3'- -CGgUU-CCUGG---UCCGGU----UCCugGUCCg -5'
2762 3' -58 NC_001491.2 + 144911 0.69 0.63504
Target:  5'- aGCCccGGAgCCGGGCUggGuGCCGGGg -3'
miRNA:   3'- -CGGuuCCU-GGUCCGGuuCcUGGUCCg -5'
2762 3' -58 NC_001491.2 + 145101 0.82 0.129261
Target:  5'- uGCCGGGGACCcuccgcccggggAGGCCGAGGAuggaaacUCGGGCu -3'
miRNA:   3'- -CGGUUCCUGG------------UCCGGUUCCU-------GGUCCG- -5'
2762 3' -58 NC_001491.2 + 145460 0.67 0.791124
Target:  5'- aGCCcccggaggGAGGAggccuccucCCGGGCgGcuGGGAgCGGGCg -3'
miRNA:   3'- -CGG--------UUCCU---------GGUCCGgU--UCCUgGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.