Results 61 - 79 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2762 | 3' | -58 | NC_001491.2 | + | 146380 | 0.68 | 0.725131 |
Target: 5'- gGCCu-GGGCCGGGUagccGGCCAcGGCg -3' miRNA: 3'- -CGGuuCCUGGUCCGguucCUGGU-CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 146430 | 0.66 | 0.817478 |
Target: 5'- aCCGAGGGCgCcgGGGCCucGGGCUguugcuGGCu -3' miRNA: 3'- cGGUUCCUG-G--UCCGGuuCCUGGu-----CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 146648 | 0.68 | 0.705435 |
Target: 5'- cGCUggGGuCCAGuCCGGGGAC--GGCg -3' miRNA: 3'- -CGGuuCCuGGUCcGGUUCCUGguCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 146767 | 0.71 | 0.525052 |
Target: 5'- cCCGAGGAgCCuGGCCcgcucGACCAGGUc -3' miRNA: 3'- cGGUUCCU-GGuCCGGuuc--CUGGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 146851 | 0.67 | 0.744512 |
Target: 5'- cGCCAcGGuCCGGGCCAcc-ACCAgaacGGCg -3' miRNA: 3'- -CGGUuCCuGGUCCGGUuccUGGU----CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 146917 | 0.83 | 0.113914 |
Target: 5'- gGCCuGGGugacgguCCAGGCCGAGGcCCGGGCc -3' miRNA: 3'- -CGGuUCCu------GGUCCGGUUCCuGGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 147097 | 0.68 | 0.695492 |
Target: 5'- cCCGGGGACgguGGGCCAcaGGGGCggCAGGg -3' miRNA: 3'- cGGUUCCUGg--UCCGGU--UCCUG--GUCCg -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 147261 | 0.7 | 0.614786 |
Target: 5'- cGCCugagGGGAgCGGGCCuucuGcGGCUGGGCu -3' miRNA: 3'- -CGGu---UCCUgGUCCGGuu--C-CUGGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 147405 | 0.7 | 0.594582 |
Target: 5'- gGCCGAGGcuCC-GGCCu-GGGCCGccGGCu -3' miRNA: 3'- -CGGUUCCu-GGuCCGGuuCCUGGU--CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 147483 | 0.66 | 0.831766 |
Target: 5'- gGCCAcccugcgcuugGGGGCCGgagggcugucgaccGGCCccGAGGGaucguacccCCGGGCg -3' miRNA: 3'- -CGGU-----------UCCUGGU--------------CCGG--UUCCU---------GGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 147711 | 0.7 | 0.578494 |
Target: 5'- gGCC-AGGGCCuggggaucgaaggugAGcGCCGGGcGCCAGGCc -3' miRNA: 3'- -CGGuUCCUGG---------------UC-CGGUUCcUGGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 147754 | 0.66 | 0.842348 |
Target: 5'- cGCCGuc--CCGGGCCGgGGGGCCgcugcagcGGGCc -3' miRNA: 3'- -CGGUuccuGGUCCGGU-UCCUGG--------UCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 147920 | 0.71 | 0.515349 |
Target: 5'- cGCCGAGaGccGCCGGGgCGGGaGGCCGGGa -3' miRNA: 3'- -CGGUUC-C--UGGUCCgGUUC-CUGGUCCg -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 148018 | 0.68 | 0.685497 |
Target: 5'- uGCC--GGcCCAGGCguGGGACCGcuuGGUg -3' miRNA: 3'- -CGGuuCCuGGUCCGguUCCUGGU---CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 148092 | 0.66 | 0.817478 |
Target: 5'- gGCCAGGucCCcGGUCGacagcagcAGGACCcccuGGGCg -3' miRNA: 3'- -CGGUUCcuGGuCCGGU--------UCCUGG----UCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 148308 | 0.66 | 0.807976 |
Target: 5'- uGCUggagguGAGGACCGcgcGGCUGagguggcgcucccGGGGCCAGcGCa -3' miRNA: 3'- -CGG------UUCCUGGU---CCGGU-------------UCCUGGUC-CG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 148687 | 0.66 | 0.842348 |
Target: 5'- aGCuCGGGGAUCAGaagcuCCGAGGGCUccacGGCc -3' miRNA: 3'- -CG-GUUCCUGGUCc----GGUUCCUGGu---CCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 148747 | 0.68 | 0.705435 |
Target: 5'- aCCAGGGGCUcGGCCucGGcGUCGGGCu -3' miRNA: 3'- cGGUUCCUGGuCCGGuuCC-UGGUCCG- -5' |
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2762 | 3' | -58 | NC_001491.2 | + | 148959 | 0.8 | 0.175638 |
Target: 5'- gGCgGAGGGCCuGGGCCAcgccGGGGCuCGGGCc -3' miRNA: 3'- -CGgUUCCUGG-UCCGGU----UCCUG-GUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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