miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2762 3' -58 NC_001491.2 + 148959 0.8 0.175638
Target:  5'- gGCgGAGGGCCuGGGCCAcgccGGGGCuCGGGCc -3'
miRNA:   3'- -CGgUUCCUGG-UCCGGU----UCCUG-GUCCG- -5'
2762 3' -58 NC_001491.2 + 148747 0.68 0.705435
Target:  5'- aCCAGGGGCUcGGCCucGGcGUCGGGCu -3'
miRNA:   3'- cGGUUCCUGGuCCGGuuCC-UGGUCCG- -5'
2762 3' -58 NC_001491.2 + 148687 0.66 0.842348
Target:  5'- aGCuCGGGGAUCAGaagcuCCGAGGGCUccacGGCc -3'
miRNA:   3'- -CG-GUUCCUGGUCc----GGUUCCUGGu---CCG- -5'
2762 3' -58 NC_001491.2 + 148308 0.66 0.807976
Target:  5'- uGCUggagguGAGGACCGcgcGGCUGagguggcgcucccGGGGCCAGcGCa -3'
miRNA:   3'- -CGG------UUCCUGGU---CCGGU-------------UCCUGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 148092 0.66 0.817478
Target:  5'- gGCCAGGucCCcGGUCGacagcagcAGGACCcccuGGGCg -3'
miRNA:   3'- -CGGUUCcuGGuCCGGU--------UCCUGG----UCCG- -5'
2762 3' -58 NC_001491.2 + 148018 0.68 0.685497
Target:  5'- uGCC--GGcCCAGGCguGGGACCGcuuGGUg -3'
miRNA:   3'- -CGGuuCCuGGUCCGguUCCUGGU---CCG- -5'
2762 3' -58 NC_001491.2 + 147920 0.71 0.515349
Target:  5'- cGCCGAGaGccGCCGGGgCGGGaGGCCGGGa -3'
miRNA:   3'- -CGGUUC-C--UGGUCCgGUUC-CUGGUCCg -5'
2762 3' -58 NC_001491.2 + 147754 0.66 0.842348
Target:  5'- cGCCGuc--CCGGGCCGgGGGGCCgcugcagcGGGCc -3'
miRNA:   3'- -CGGUuccuGGUCCGGU-UCCUGG--------UCCG- -5'
2762 3' -58 NC_001491.2 + 147711 0.7 0.578494
Target:  5'- gGCC-AGGGCCuggggaucgaaggugAGcGCCGGGcGCCAGGCc -3'
miRNA:   3'- -CGGuUCCUGG---------------UC-CGGUUCcUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 147483 0.66 0.831766
Target:  5'- gGCCAcccugcgcuugGGGGCCGgagggcugucgaccGGCCccGAGGGaucguacccCCGGGCg -3'
miRNA:   3'- -CGGU-----------UCCUGGU--------------CCGG--UUCCU---------GGUCCG- -5'
2762 3' -58 NC_001491.2 + 147405 0.7 0.594582
Target:  5'- gGCCGAGGcuCC-GGCCu-GGGCCGccGGCu -3'
miRNA:   3'- -CGGUUCCu-GGuCCGGuuCCUGGU--CCG- -5'
2762 3' -58 NC_001491.2 + 147261 0.7 0.614786
Target:  5'- cGCCugagGGGAgCGGGCCuucuGcGGCUGGGCu -3'
miRNA:   3'- -CGGu---UCCUgGUCCGGuu--C-CUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 147097 0.68 0.695492
Target:  5'- cCCGGGGACgguGGGCCAcaGGGGCggCAGGg -3'
miRNA:   3'- cGGUUCCUGg--UCCGGU--UCCUG--GUCCg -5'
2762 3' -58 NC_001491.2 + 146917 0.83 0.113914
Target:  5'- gGCCuGGGugacgguCCAGGCCGAGGcCCGGGCc -3'
miRNA:   3'- -CGGuUCCu------GGUCCGGUUCCuGGUCCG- -5'
2762 3' -58 NC_001491.2 + 146851 0.67 0.744512
Target:  5'- cGCCAcGGuCCGGGCCAcc-ACCAgaacGGCg -3'
miRNA:   3'- -CGGUuCCuGGUCCGGUuccUGGU----CCG- -5'
2762 3' -58 NC_001491.2 + 146767 0.71 0.525052
Target:  5'- cCCGAGGAgCCuGGCCcgcucGACCAGGUc -3'
miRNA:   3'- cGGUUCCU-GGuCCGGuuc--CUGGUCCG- -5'
2762 3' -58 NC_001491.2 + 146648 0.68 0.705435
Target:  5'- cGCUggGGuCCAGuCCGGGGAC--GGCg -3'
miRNA:   3'- -CGGuuCCuGGUCcGGUUCCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 146430 0.66 0.817478
Target:  5'- aCCGAGGGCgCcgGGGCCucGGGCUguugcuGGCu -3'
miRNA:   3'- cGGUUCCUG-G--UCCGGuuCCUGGu-----CCG- -5'
2762 3' -58 NC_001491.2 + 146380 0.68 0.725131
Target:  5'- gGCCu-GGGCCGGGUagccGGCCAcGGCg -3'
miRNA:   3'- -CGGuuCCUGGUCCGguucCUGGU-CCG- -5'
2762 3' -58 NC_001491.2 + 145460 0.67 0.791124
Target:  5'- aGCCcccggaggGAGGAggccuccucCCGGGCgGcuGGGAgCGGGCg -3'
miRNA:   3'- -CGG--------UUCCU---------GGUCCGgU--UCCUgGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.