miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2762 3' -58 NC_001491.2 + 146430 0.66 0.817478
Target:  5'- aCCGAGGGCgCcgGGGCCucGGGCUguugcuGGCu -3'
miRNA:   3'- cGGUUCCUG-G--UCCGGuuCCUGGu-----CCG- -5'
2762 3' -58 NC_001491.2 + 115819 0.66 0.825943
Target:  5'- aGCCGGcGGcCCAGGCC--GGAgCCucGGCc -3'
miRNA:   3'- -CGGUU-CCuGGUCCGGuuCCU-GGu-CCG- -5'
2762 3' -58 NC_001491.2 + 147483 0.66 0.831766
Target:  5'- gGCCAcccugcgcuugGGGGCCGgagggcugucgaccGGCCccGAGGGaucguacccCCGGGCg -3'
miRNA:   3'- -CGGU-----------UCCUGGU--------------CCGG--UUCCU---------GGUCCG- -5'
2762 3' -58 NC_001491.2 + 88446 0.66 0.841545
Target:  5'- -aCGGGGAC--GGCCAAcaggcaagcaagcGGGCCAGGg -3'
miRNA:   3'- cgGUUCCUGguCCGGUU-------------CCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 148687 0.66 0.842348
Target:  5'- aGCuCGGGGAUCAGaagcuCCGAGGGCUccacGGCc -3'
miRNA:   3'- -CG-GUUCCUGGUCc----GGUUCCUGGu---CCG- -5'
2762 3' -58 NC_001491.2 + 115119 0.67 0.763509
Target:  5'- aCCGGGGACCuGGCCuuc-ACC-GGCu -3'
miRNA:   3'- cGGUUCCUGGuCCGGuuccUGGuCCG- -5'
2762 3' -58 NC_001491.2 + 118040 0.67 0.754063
Target:  5'- -aCGAGGAcgaCCAGGCgGAuGGugCcgGGGCg -3'
miRNA:   3'- cgGUUCCU---GGUCCGgUU-CCugG--UCCG- -5'
2762 3' -58 NC_001491.2 + 2250 0.68 0.724153
Target:  5'- -aCAAGGACCcgagcGGUCGuauGGGACCcaucaaaAGGCg -3'
miRNA:   3'- cgGUUCCUGGu----CCGGU---UCCUGG-------UCCG- -5'
2762 3' -58 NC_001491.2 + 119402 0.68 0.725131
Target:  5'- aGCgcGGGACCGGGCCccauAGG-CUAGaGCc -3'
miRNA:   3'- -CGguUCCUGGUCCGGu---UCCuGGUC-CG- -5'
2762 3' -58 NC_001491.2 + 49498 0.68 0.725131
Target:  5'- aCCGAGGccgGCCAuGGCCGuugccgccGGGGCCGucccggacgcGGCg -3'
miRNA:   3'- cGGUUCC---UGGU-CCGGU--------UCCUGGU----------CCG- -5'
2762 3' -58 NC_001491.2 + 146380 0.68 0.725131
Target:  5'- gGCCu-GGGCCGGGUagccGGCCAcGGCg -3'
miRNA:   3'- -CGGuuCCUGGUCCGguucCUGGU-CCG- -5'
2762 3' -58 NC_001491.2 + 141588 0.68 0.738735
Target:  5'- cCCGcGGGCCcugcgcccguaccuGGcCCGGGGGCCAGGg -3'
miRNA:   3'- cGGUuCCUGGu-------------CC-GGUUCCUGGUCCg -5'
2762 3' -58 NC_001491.2 + 146851 0.67 0.744512
Target:  5'- cGCCAcGGuCCGGGCCAcc-ACCAgaacGGCg -3'
miRNA:   3'- -CGGUuCCuGGUCCGGUuccUGGU----CCG- -5'
2762 3' -58 NC_001491.2 + 475 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 441 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 407 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 373 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 339 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 305 0.67 0.744512
Target:  5'- cCCAGuGGGCguGGCCucccaguGGGCguGGCc -3'
miRNA:   3'- cGGUU-CCUGguCCGGuu-----CCUGguCCG- -5'
2762 3' -58 NC_001491.2 + 140242 0.67 0.754063
Target:  5'- -gCGGGGACgGGGaCGGGGG-CGGGCg -3'
miRNA:   3'- cgGUUCCUGgUCCgGUUCCUgGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.