miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2762 5' -59.2 NC_001491.2 + 146498 0.66 0.77284
Target:  5'- cGGCCGcGGcaGCCuugcgucgGGGcCCGAGGGCCGc -3'
miRNA:   3'- uCCGGUuCC--UGG--------UCC-GGUUCCUGGUc -5'
2762 5' -59.2 NC_001491.2 + 147920 0.66 0.763509
Target:  5'- -cGCCGAGaGccGCCGGGgCGGGaGGCCGGg -3'
miRNA:   3'- ucCGGUUC-C--UGGUCCgGUUC-CUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 146854 0.66 0.744512
Target:  5'- cGGcGCCAcGGuCCGGGCCAcc-ACCAGa -3'
miRNA:   3'- -UC-CGGUuCCuGGUCCGGUuccUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 116886 0.66 0.734865
Target:  5'- uGGCCuacccGAGaGACgAGGCgGGGaGGCCGGa -3'
miRNA:   3'- uCCGG-----UUC-CUGgUCCGgUUC-CUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 107123 0.66 0.734865
Target:  5'- uGGCCAguagAGGuggucACCGGGCCAGuagcuGACCAc -3'
miRNA:   3'- uCCGGU----UCC-----UGGUCCGGUUc----CUGGUc -5'
2762 5' -59.2 NC_001491.2 + 57082 0.66 0.734865
Target:  5'- cAGGCCGAGuGGCCuGGUuacacaacccgCAAGGAacaUCAGa -3'
miRNA:   3'- -UCCGGUUC-CUGGuCCG-----------GUUCCU---GGUC- -5'
2762 5' -59.2 NC_001491.2 + 117527 0.67 0.715318
Target:  5'- cGGCCGAGGAggccCCGcagacGGCCGuguGGGACUu- -3'
miRNA:   3'- uCCGGUUCCU----GGU-----CCGGU---UCCUGGuc -5'
2762 5' -59.2 NC_001491.2 + 118253 0.67 0.714333
Target:  5'- uGGCCccGGGGaacggucGCCGGGCCAcGGGCUc- -3'
miRNA:   3'- uCCGG--UUCC-------UGGUCCGGUuCCUGGuc -5'
2762 5' -59.2 NC_001491.2 + 102118 0.67 0.705435
Target:  5'- -cGCUacGAGGACCucGCCAAGGAUUGGc -3'
miRNA:   3'- ucCGG--UUCCUGGucCGGUUCCUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 141584 0.67 0.705435
Target:  5'- cGGGCCcuGcGcccguACCuGGcCCGGGGGCCAGg -3'
miRNA:   3'- -UCCGGuuC-C-----UGGuCC-GGUUCCUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 147512 0.67 0.699476
Target:  5'- aGGGcCCGGGGAgCCugguggcccgggguGGCCAcccugcgcuugGGGGCCGGa -3'
miRNA:   3'- -UCC-GGUUCCU-GGu-------------CCGGU-----------UCCUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 148034 0.67 0.696489
Target:  5'- gGGGCCccgguccaguugccGGcCCAGGCguGGGACCGc -3'
miRNA:   3'- -UCCGGuu------------CCuGGUCCGguUCCUGGUc -5'
2762 5' -59.2 NC_001491.2 + 147278 0.67 0.695492
Target:  5'- uGGGCCGGGGAggcGGCCGccugagGGGAgCGGg -3'
miRNA:   3'- -UCCGGUUCCUgguCCGGU------UCCUgGUC- -5'
2762 5' -59.2 NC_001491.2 + 101695 0.67 0.685497
Target:  5'- gAGGCCGugguGGAgCuGGCCAGGuGcaccGCCAGc -3'
miRNA:   3'- -UCCGGUu---CCUgGuCCGGUUC-C----UGGUC- -5'
2762 5' -59.2 NC_001491.2 + 117644 0.67 0.685497
Target:  5'- cGGGCCgGAGcccucACCGGcuccCCAAGGACCAGc -3'
miRNA:   3'- -UCCGG-UUCc----UGGUCc---GGUUCCUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 121644 0.68 0.655286
Target:  5'- uGGCCcccGGGCCAGGUac-GGGCgCAGg -3'
miRNA:   3'- uCCGGuu-CCUGGUCCGguuCCUG-GUC- -5'
2762 5' -59.2 NC_001491.2 + 111233 0.68 0.639092
Target:  5'- gGGGCCAcccaccagAGGGCgcagacgggggagaAGGCCGgcugccccAGGACCAGc -3'
miRNA:   3'- -UCCGGU--------UCCUGg-------------UCCGGU--------UCCUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 29855 0.68 0.62491
Target:  5'- uAGGUCGcuGGGACUGGGgauCCAGGGGCUg- -3'
miRNA:   3'- -UCCGGU--UCCUGGUCC---GGUUCCUGGuc -5'
2762 5' -59.2 NC_001491.2 + 114880 0.68 0.62491
Target:  5'- cGGGCCc-GGACUguucgcgaGGGCCGAGG-CCGc -3'
miRNA:   3'- -UCCGGuuCCUGG--------UCCGGUUCCuGGUc -5'
2762 5' -59.2 NC_001491.2 + 147687 0.68 0.62491
Target:  5'- gAGcGCCGGGcGCCAGGCCucgGGGAaCAGc -3'
miRNA:   3'- -UC-CGGUUCcUGGUCCGGu--UCCUgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.