miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2762 5' -59.2 NC_001491.2 + 10942 0.71 0.449725
Target:  5'- -uGCCuGGGGAuCCAGGCCGAGGGucuucuCCAGc -3'
miRNA:   3'- ucCGG-UUCCU-GGUCCGGUUCCU------GGUC- -5'
2762 5' -59.2 NC_001491.2 + 29855 0.68 0.62491
Target:  5'- uAGGUCGcuGGGACUGGGgauCCAGGGGCUg- -3'
miRNA:   3'- -UCCGGU--UCCUGGUCC---GGUUCCUGGuc -5'
2762 5' -59.2 NC_001491.2 + 45127 0.69 0.544658
Target:  5'- gGGGCCGcggcgGGGGCCGccgcagauuuGGCCG-GGGCCGc -3'
miRNA:   3'- -UCCGGU-----UCCUGGU----------CCGGUuCCUGGUc -5'
2762 5' -59.2 NC_001491.2 + 45193 0.69 0.544658
Target:  5'- gGGGCCGcggcgGGGGCCGccgcagauuuGGCCG-GGGCCGc -3'
miRNA:   3'- -UCCGGU-----UCCUGGU----------CCGGUuCCUGGUc -5'
2762 5' -59.2 NC_001491.2 + 45259 0.69 0.544658
Target:  5'- gGGGCCGcggcgGGGGCCGccgcagauuuGGCCG-GGGCCGc -3'
miRNA:   3'- -UCCGGU-----UCCUGGU----------CCGGUuCCUGGUc -5'
2762 5' -59.2 NC_001491.2 + 57082 0.66 0.734865
Target:  5'- cAGGCCGAGuGGCCuGGUuacacaacccgCAAGGAacaUCAGa -3'
miRNA:   3'- -UCCGGUUC-CUGGuCCG-----------GUUCCU---GGUC- -5'
2762 5' -59.2 NC_001491.2 + 94113 0.68 0.604674
Target:  5'- uGGCCGGGuGcACCcGGCCAAcGACCAc -3'
miRNA:   3'- uCCGGUUC-C-UGGuCCGGUUcCUGGUc -5'
2762 5' -59.2 NC_001491.2 + 101409 0.72 0.38074
Target:  5'- uGGGCaggaaaAAGGACgAGGCCcAGGGCCc- -3'
miRNA:   3'- -UCCGg-----UUCCUGgUCCGGuUCCUGGuc -5'
2762 5' -59.2 NC_001491.2 + 101695 0.67 0.685497
Target:  5'- gAGGCCGugguGGAgCuGGCCAGGuGcaccGCCAGc -3'
miRNA:   3'- -UCCGGUu---CCUgGuCCGGUUC-C----UGGUC- -5'
2762 5' -59.2 NC_001491.2 + 102118 0.67 0.705435
Target:  5'- -cGCUacGAGGACCucGCCAAGGAUUGGc -3'
miRNA:   3'- ucCGG--UUCCUGGucCGGUUCCUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 107123 0.66 0.734865
Target:  5'- uGGCCAguagAGGuggucACCGGGCCAGuagcuGACCAc -3'
miRNA:   3'- uCCGGU----UCC-----UGGUCCGGUUc----CUGGUc -5'
2762 5' -59.2 NC_001491.2 + 107732 0.68 0.623897
Target:  5'- uGGGCCA-GGauccguaccacgcGCCGGGCCAGGcGCaCGGg -3'
miRNA:   3'- -UCCGGUuCC-------------UGGUCCGGUUCcUG-GUC- -5'
2762 5' -59.2 NC_001491.2 + 111233 0.68 0.639092
Target:  5'- gGGGCCAcccaccagAGGGCgcagacgggggagaAGGCCGgcugccccAGGACCAGc -3'
miRNA:   3'- -UCCGGU--------UCCUGg-------------UCCGGU--------UCCUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 112431 0.72 0.405778
Target:  5'- aGGGCaGGGGGCUAGGgCAGgGGGCUAGg -3'
miRNA:   3'- -UCCGgUUCCUGGUCCgGUU-CCUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 112470 0.72 0.405778
Target:  5'- aGGGCaGGGGGCUAGGgCAGgGGGCUAGg -3'
miRNA:   3'- -UCCGgUUCCUGGUCCgGUU-CCUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 112509 0.72 0.405778
Target:  5'- aGGGCaGGGGGCUAGGgCAGgGGGCUAGg -3'
miRNA:   3'- -UCCGgUUCCUGGUCCgGUU-CCUGGUC- -5'
2762 5' -59.2 NC_001491.2 + 112983 0.7 0.525052
Target:  5'- cGGGCUggGGGGGCCAGGCUcucucucGGGCgCGGg -3'
miRNA:   3'- -UCCGG--UUCCUGGUCCGGuu-----CCUG-GUC- -5'
2762 5' -59.2 NC_001491.2 + 114700 0.76 0.224601
Target:  5'- cGGCugCAAGGAcaugcgggcCCAGGCCGAGGGCCu- -3'
miRNA:   3'- uCCG--GUUCCU---------GGUCCGGUUCCUGGuc -5'
2762 5' -59.2 NC_001491.2 + 114880 0.68 0.62491
Target:  5'- cGGGCCc-GGACUguucgcgaGGGCCGAGG-CCGc -3'
miRNA:   3'- -UCCGGuuCCUGG--------UCCGGUUCCuGGUc -5'
2762 5' -59.2 NC_001491.2 + 115708 0.72 0.414351
Target:  5'- cGGGCCAccAGGcuccCCGGGCCcuGGGACCc- -3'
miRNA:   3'- -UCCGGU--UCCu---GGUCCGGu-UCCUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.