miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27620 5' -53.6 NC_005882.1 + 23445 0.66 0.74997
Target:  5'- -gGCGUCGAgcggccgcUGUCGGCGAugaUCGACg-- -3'
miRNA:   3'- aaUGCGGCU--------GCAGCUGCU---AGCUGacc -5'
27620 5' -53.6 NC_005882.1 + 24794 0.66 0.695375
Target:  5'- --uCGCCGAUGucuUCGACGGUCagUUGGu -3'
miRNA:   3'- aauGCGGCUGC---AGCUGCUAGcuGACC- -5'
27620 5' -53.6 NC_005882.1 + 4867 0.66 0.695375
Target:  5'- -aGCuGCCGGCGUCGACugGAgcgCGgaccgguuccGCUGGc -3'
miRNA:   3'- aaUG-CGGCUGCAGCUG--CUa--GC----------UGACC- -5'
27620 5' -53.6 NC_005882.1 + 11859 0.67 0.684214
Target:  5'- -gGCGUCGuaGUCGGCG-UCGcGCUGGg -3'
miRNA:   3'- aaUGCGGCugCAGCUGCuAGC-UGACC- -5'
27620 5' -53.6 NC_005882.1 + 23671 0.67 0.672999
Target:  5'- --uCGUCGACG-CGcCGAUCGACcaaGGg -3'
miRNA:   3'- aauGCGGCUGCaGCuGCUAGCUGa--CC- -5'
27620 5' -53.6 NC_005882.1 + 19032 0.67 0.661744
Target:  5'- -cGCGCgGAUGgccgaUGACGAUCGGCgcuucgUGGa -3'
miRNA:   3'- aaUGCGgCUGCa----GCUGCUAGCUG------ACC- -5'
27620 5' -53.6 NC_005882.1 + 23730 0.67 0.65046
Target:  5'- cUugGUCGaucggcGCGUCGACGAaCuGCUGGc -3'
miRNA:   3'- aAugCGGC------UGCAGCUGCUaGcUGACC- -5'
27620 5' -53.6 NC_005882.1 + 12189 0.67 0.65046
Target:  5'- -gGCGCCcgcGAUccaGUCGACGGUCGAg-GGc -3'
miRNA:   3'- aaUGCGG---CUG---CAGCUGCUAGCUgaCC- -5'
27620 5' -53.6 NC_005882.1 + 6320 0.67 0.639158
Target:  5'- -gACGCCGGucaaagcuCGUUGACGcgCGACg-- -3'
miRNA:   3'- aaUGCGGCU--------GCAGCUGCuaGCUGacc -5'
27620 5' -53.6 NC_005882.1 + 29785 0.68 0.627849
Target:  5'- gUGuCGCCGcuCGUCGACuGAcCGACUGu -3'
miRNA:   3'- aAU-GCGGCu-GCAGCUG-CUaGCUGACc -5'
27620 5' -53.6 NC_005882.1 + 12438 0.68 0.627849
Target:  5'- gUGCcgGCCGGCGUUGAacCGcUCGACaUGGc -3'
miRNA:   3'- aAUG--CGGCUGCAGCU--GCuAGCUG-ACC- -5'
27620 5' -53.6 NC_005882.1 + 30532 0.68 0.616545
Target:  5'- -cGCgGCCGACaaggUGACGGUCGACgugccGGa -3'
miRNA:   3'- aaUG-CGGCUGca--GCUGCUAGCUGa----CC- -5'
27620 5' -53.6 NC_005882.1 + 2258 0.68 0.616545
Target:  5'- -cAgGCCGcgaaGUCGAUGAUCGACg-- -3'
miRNA:   3'- aaUgCGGCug--CAGCUGCUAGCUGacc -5'
27620 5' -53.6 NC_005882.1 + 21184 0.68 0.605254
Target:  5'- --uCGCCGACaUCGGCGGUCGuuUcGGc -3'
miRNA:   3'- aauGCGGCUGcAGCUGCUAGCugA-CC- -5'
27620 5' -53.6 NC_005882.1 + 29154 0.68 0.593989
Target:  5'- -cGCGCUGACGcUGAaGAUCGGCUa- -3'
miRNA:   3'- aaUGCGGCUGCaGCUgCUAGCUGAcc -5'
27620 5' -53.6 NC_005882.1 + 18827 0.68 0.582757
Target:  5'- aUUGCGCCGGCGUgauACGcgCGAUgcagGGa -3'
miRNA:   3'- -AAUGCGGCUGCAgc-UGCuaGCUGa---CC- -5'
27620 5' -53.6 NC_005882.1 + 30134 0.68 0.582757
Target:  5'- -aACGCCGACGUCGccuuucGCGGU-GACg-- -3'
miRNA:   3'- aaUGCGGCUGCAGC------UGCUAgCUGacc -5'
27620 5' -53.6 NC_005882.1 + 28932 0.68 0.582757
Target:  5'- --cCGCCGugGaUCGGUGAUCGACa-- -3'
miRNA:   3'- aauGCGGCugC-AGCUGCUAGCUGacc -5'
27620 5' -53.6 NC_005882.1 + 26290 0.69 0.571568
Target:  5'- -gACGCCGgccuucuuguagGCGUCGAUGGUCGcCUu- -3'
miRNA:   3'- aaUGCGGC------------UGCAGCUGCUAGCuGAcc -5'
27620 5' -53.6 NC_005882.1 + 12336 0.69 0.571568
Target:  5'- -gGCuGCCGGCGgCGcCGAUCGgcaacGCUGGu -3'
miRNA:   3'- aaUG-CGGCUGCaGCuGCUAGC-----UGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.