miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27621 3' -52.5 NC_005882.1 + 27552 0.66 0.792262
Target:  5'- ---cGGCAUcgGGCGCUCGUcggcgguCGCCGCg -3'
miRNA:   3'- ccuaCUGUGa-CUGUGGGCAu------GUGGCG- -5'
27621 3' -52.5 NC_005882.1 + 30504 0.66 0.792262
Target:  5'- uGGGUcGCGC-GAUcguACUCGaGCACCGCg -3'
miRNA:   3'- -CCUAcUGUGaCUG---UGGGCaUGUGGCG- -5'
27621 3' -52.5 NC_005882.1 + 11638 0.66 0.792262
Target:  5'- aGGAUGAuCGCggcGACgagccaGCUCGUcaGCCGCg -3'
miRNA:   3'- -CCUACU-GUGa--CUG------UGGGCAugUGGCG- -5'
27621 3' -52.5 NC_005882.1 + 3376 0.66 0.782052
Target:  5'- cGcgGGCGCUGcGCgGCCUGgGCuACCGCg -3'
miRNA:   3'- cCuaCUGUGAC-UG-UGGGCaUG-UGGCG- -5'
27621 3' -52.5 NC_005882.1 + 4952 0.66 0.771675
Target:  5'- cGGA--ACAC-GAC-CUCGuUGCGCCGCg -3'
miRNA:   3'- -CCUacUGUGaCUGuGGGC-AUGUGGCG- -5'
27621 3' -52.5 NC_005882.1 + 6472 0.66 0.771675
Target:  5'- --uUGugGCUGuCGCCCagGCAgCGCg -3'
miRNA:   3'- ccuACugUGACuGUGGGcaUGUgGCG- -5'
27621 3' -52.5 NC_005882.1 + 30410 0.66 0.761144
Target:  5'- aGAUGGCGCcGAgaauCACaCCGUccucGCACCGg -3'
miRNA:   3'- cCUACUGUGaCU----GUG-GGCA----UGUGGCg -5'
27621 3' -52.5 NC_005882.1 + 19408 0.67 0.728749
Target:  5'- gGGAUGAC-CUGAuCAgCCGUGuC-CCGg -3'
miRNA:   3'- -CCUACUGuGACU-GUgGGCAU-GuGGCg -5'
27621 3' -52.5 NC_005882.1 + 11929 0.67 0.728749
Target:  5'- ---cGGCGCcGccGCGCCCGUG-GCCGCg -3'
miRNA:   3'- ccuaCUGUGaC--UGUGGGCAUgUGGCG- -5'
27621 3' -52.5 NC_005882.1 + 31516 0.67 0.728749
Target:  5'- ---cGACACcgacgUGACGCUCGU-CGCCGg -3'
miRNA:   3'- ccuaCUGUG-----ACUGUGGGCAuGUGGCg -5'
27621 3' -52.5 NC_005882.1 + 15093 0.67 0.728749
Target:  5'- -cAUGucgGCUGACACgCCGgUGCugCGCu -3'
miRNA:   3'- ccUACug-UGACUGUG-GGC-AUGugGCG- -5'
27621 3' -52.5 NC_005882.1 + 26899 0.67 0.728749
Target:  5'- cGGUGGCgGCUccCGCCUGUcCACCGUg -3'
miRNA:   3'- cCUACUG-UGAcuGUGGGCAuGUGGCG- -5'
27621 3' -52.5 NC_005882.1 + 29158 0.67 0.717726
Target:  5'- --cUGACGCUGAagaucggcuaCGCCgGcGCGCCGUu -3'
miRNA:   3'- ccuACUGUGACU----------GUGGgCaUGUGGCG- -5'
27621 3' -52.5 NC_005882.1 + 13310 0.67 0.717726
Target:  5'- aGGcgGACcuaccGCUG-CAguaCGUGCGCCGCg -3'
miRNA:   3'- -CCuaCUG-----UGACuGUgg-GCAUGUGGCG- -5'
27621 3' -52.5 NC_005882.1 + 5262 0.68 0.695421
Target:  5'- ---cGACcaUGACGCCCG-GCACCGa -3'
miRNA:   3'- ccuaCUGugACUGUGGGCaUGUGGCg -5'
27621 3' -52.5 NC_005882.1 + 9419 0.68 0.684163
Target:  5'- cGAUGGCGUUGGCACCCGaugaACAagaacucguuUCGCg -3'
miRNA:   3'- cCUACUGUGACUGUGGGCa---UGU----------GGCG- -5'
27621 3' -52.5 NC_005882.1 + 21490 0.68 0.684163
Target:  5'- cGGuauUGAUcguCgucGGCGCCgGUGCGCCGUa -3'
miRNA:   3'- -CCu--ACUGu--Ga--CUGUGGgCAUGUGGCG- -5'
27621 3' -52.5 NC_005882.1 + 15680 0.68 0.684163
Target:  5'- gGGAUGcgcgGCACgcccuUGAUgACCUGUACGgCGCg -3'
miRNA:   3'- -CCUAC----UGUG-----ACUG-UGGGCAUGUgGCG- -5'
27621 3' -52.5 NC_005882.1 + 3197 0.68 0.684163
Target:  5'- ---gGACAgUGACgccGCCCGcACGCuCGCg -3'
miRNA:   3'- ccuaCUGUgACUG---UGGGCaUGUG-GCG- -5'
27621 3' -52.5 NC_005882.1 + 27003 0.68 0.672852
Target:  5'- gGGAUucgGGCGC-GGCGCgcucgUCGUugGCCGCg -3'
miRNA:   3'- -CCUA---CUGUGaCUGUG-----GGCAugUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.