miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27622 3' -55.4 NC_005882.1 + 28913 0.66 0.562162
Target:  5'- uGCCGCUCGCGAgaa----CCGCCGUAa -3'
miRNA:   3'- -CGGCGGGUGUUagguaacGGCGGUAU- -5'
27622 3' -55.4 NC_005882.1 + 12306 0.66 0.550901
Target:  5'- -gCGCUCGCAugcaCCg--GCCGCCGUGa -3'
miRNA:   3'- cgGCGGGUGUua--GGuaaCGGCGGUAU- -5'
27622 3' -55.4 NC_005882.1 + 25232 0.66 0.53971
Target:  5'- aGuuGCCCugGugGUCCGU-GCCGaUCGUGu -3'
miRNA:   3'- -CggCGGGugU--UAGGUAaCGGC-GGUAU- -5'
27622 3' -55.4 NC_005882.1 + 25325 0.66 0.521971
Target:  5'- gGCCGCUCAugaacaucCAGUCCAUcGCCGaaggcauuaccuacaCCGUGa -3'
miRNA:   3'- -CGGCGGGU--------GUUAGGUAaCGGC---------------GGUAU- -5'
27622 3' -55.4 NC_005882.1 + 24133 0.66 0.51757
Target:  5'- gGCCGCCCgGCAGcUCgAccUUGCCGaUCAUGc -3'
miRNA:   3'- -CGGCGGG-UGUU-AGgU--AACGGC-GGUAU- -5'
27622 3' -55.4 NC_005882.1 + 12190 0.67 0.506636
Target:  5'- aGgCGCCCGCGAUCCAgucgacgGUCGagggCAUGa -3'
miRNA:   3'- -CgGCGGGUGUUAGGUaa-----CGGCg---GUAU- -5'
27622 3' -55.4 NC_005882.1 + 12606 0.67 0.495801
Target:  5'- cGCCGaucgCCGCAGcgCCGgccGCCGCCGc- -3'
miRNA:   3'- -CGGCg---GGUGUUa-GGUaa-CGGCGGUau -5'
27622 3' -55.4 NC_005882.1 + 20317 0.67 0.481876
Target:  5'- cGCCGUCCagacagcgaccgaaGCGAUCCAguugcGCCGCgAa- -3'
miRNA:   3'- -CGGCGGG--------------UGUUAGGUaa---CGGCGgUau -5'
27622 3' -55.4 NC_005882.1 + 24838 0.67 0.474457
Target:  5'- gGgCGCCCAgCGAUCa---GCCGCCGa- -3'
miRNA:   3'- -CgGCGGGU-GUUAGguaaCGGCGGUau -5'
27622 3' -55.4 NC_005882.1 + 27660 0.67 0.463958
Target:  5'- cGCCGCggCCGCGG-CCugcGUCGCCAUGc -3'
miRNA:   3'- -CGGCG--GGUGUUaGGuaaCGGCGGUAU- -5'
27622 3' -55.4 NC_005882.1 + 11806 0.68 0.433216
Target:  5'- uCCGUCC---GUCCA-UGCCGCCAg- -3'
miRNA:   3'- cGGCGGGuguUAGGUaACGGCGGUau -5'
27622 3' -55.4 NC_005882.1 + 26685 0.68 0.430207
Target:  5'- cGCCGCUgauccagcgcaccgCGCAGUUCGcgGCCGCCc-- -3'
miRNA:   3'- -CGGCGG--------------GUGUUAGGUaaCGGCGGuau -5'
27622 3' -55.4 NC_005882.1 + 5053 0.68 0.429207
Target:  5'- aGCCGCUCGCAAgggcaaggcacugCCGUucgGCgGCCGUc -3'
miRNA:   3'- -CGGCGGGUGUUa------------GGUAa--CGgCGGUAu -5'
27622 3' -55.4 NC_005882.1 + 4163 0.68 0.423235
Target:  5'- cGCCGCCCgauuccgcgACGAcggCCAggaGcCCGCCAUGc -3'
miRNA:   3'- -CGGCGGG---------UGUUa--GGUaa-C-GGCGGUAU- -5'
27622 3' -55.4 NC_005882.1 + 33425 0.69 0.366368
Target:  5'- cGCC-CCCACAugaccgcuGUUCAacgUUGCCGUCGUGg -3'
miRNA:   3'- -CGGcGGGUGU--------UAGGU---AACGGCGGUAU- -5'
27622 3' -55.4 NC_005882.1 + 8653 0.7 0.348619
Target:  5'- uCUGCCCgACAgcGUCCAcacgUGCCGCUAa- -3'
miRNA:   3'- cGGCGGG-UGU--UAGGUa---ACGGCGGUau -5'
27622 3' -55.4 NC_005882.1 + 30752 0.7 0.31499
Target:  5'- uGCCGCCgGC-AUCCAUgaUGgUGCCAg- -3'
miRNA:   3'- -CGGCGGgUGuUAGGUA--ACgGCGGUau -5'
27622 3' -55.4 NC_005882.1 + 28241 0.72 0.255234
Target:  5'- aGCCGCCggccgUACAGcCCAaggUGCCGCCGg- -3'
miRNA:   3'- -CGGCGG-----GUGUUaGGUa--ACGGCGGUau -5'
27622 3' -55.4 NC_005882.1 + 12921 0.72 0.241826
Target:  5'- -gUGCCCGCGA-CCAgugcUGCCGCCGg- -3'
miRNA:   3'- cgGCGGGUGUUaGGUa---ACGGCGGUau -5'
27622 3' -55.4 NC_005882.1 + 14336 0.74 0.173304
Target:  5'- -gCGCCCGCcGUCC--UGCUGCCGUAu -3'
miRNA:   3'- cgGCGGGUGuUAGGuaACGGCGGUAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.