miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27623 5' -58.9 NC_005882.1 + 12623 0.66 0.435832
Target:  5'- uGCCGGCgacGCGAAgGUcGCCAAgcUCGa -3'
miRNA:   3'- uCGGCCG---CGCUUgCGuCGGUUgcAGC- -5'
27623 5' -58.9 NC_005882.1 + 13662 0.66 0.435832
Target:  5'- cGCUGGUgggGCGAucucACGC-GCUAcgGCGUCGa -3'
miRNA:   3'- uCGGCCG---CGCU----UGCGuCGGU--UGCAGC- -5'
27623 5' -58.9 NC_005882.1 + 8292 0.66 0.435832
Target:  5'- cGGCCguucgaGGaCGCGuGCGguGCCGAuuuCGUCa -3'
miRNA:   3'- -UCGG------CC-GCGCuUGCguCGGUU---GCAGc -5'
27623 5' -58.9 NC_005882.1 + 1280 0.66 0.435832
Target:  5'- cGCCGGUagaUGGAUcgaGCGGCCugcGCGUCGu -3'
miRNA:   3'- uCGGCCGc--GCUUG---CGUCGGu--UGCAGC- -5'
27623 5' -58.9 NC_005882.1 + 14427 0.66 0.435832
Target:  5'- -cCUGGgGCGAA-GCAGCCGauucaGCGUUGc -3'
miRNA:   3'- ucGGCCgCGCUUgCGUCGGU-----UGCAGC- -5'
27623 5' -58.9 NC_005882.1 + 25422 0.66 0.434863
Target:  5'- uGCCGGaaaGCGcGGCGCcgaAGCUAccgaguaGCGUCGc -3'
miRNA:   3'- uCGGCCg--CGC-UUGCG---UCGGU-------UGCAGC- -5'
27623 5' -58.9 NC_005882.1 + 12006 0.66 0.426202
Target:  5'- cGCCucGGCGgGcacuuGCGCGGCCAcggGCG-CGg -3'
miRNA:   3'- uCGG--CCGCgCu----UGCGUCGGU---UGCaGC- -5'
27623 5' -58.9 NC_005882.1 + 32124 0.66 0.426202
Target:  5'- uGCCuGCGCGAuCGUuguGUCGGCGcCGg -3'
miRNA:   3'- uCGGcCGCGCUuGCGu--CGGUUGCaGC- -5'
27623 5' -58.9 NC_005882.1 + 23154 0.66 0.426202
Target:  5'- gAGCUGGagGCGAugGCcGuCCAGC-UCGg -3'
miRNA:   3'- -UCGGCCg-CGCUugCGuC-GGUUGcAGC- -5'
27623 5' -58.9 NC_005882.1 + 13722 0.66 0.426202
Target:  5'- gAGCCGG-GCaucGCGCGGCCGGCc--- -3'
miRNA:   3'- -UCGGCCgCGcu-UGCGUCGGUUGcagc -5'
27623 5' -58.9 NC_005882.1 + 15139 0.66 0.423337
Target:  5'- cAGCCGacauGCGCGAcucgaucagcgcgcGCGaCAGCCAuGCGcCGc -3'
miRNA:   3'- -UCGGC----CGCGCU--------------UGC-GUCGGU-UGCaGC- -5'
27623 5' -58.9 NC_005882.1 + 20005 0.66 0.420484
Target:  5'- cGCCGGUuauuaacggaucaccGCGuuCGCGGCCGccGCGUa- -3'
miRNA:   3'- uCGGCCG---------------CGCuuGCGUCGGU--UGCAgc -5'
27623 5' -58.9 NC_005882.1 + 4322 0.66 0.416699
Target:  5'- uGGCUGGUGCGAgaaccuguuuGCGCAGUaaCAugGa-- -3'
miRNA:   3'- -UCGGCCGCGCU----------UGCGUCG--GUugCagc -5'
27623 5' -58.9 NC_005882.1 + 25888 0.66 0.416699
Target:  5'- uGCUcgGGCGCGuGGCGaCGGCCAcgaACGcCGa -3'
miRNA:   3'- uCGG--CCGCGC-UUGC-GUCGGU---UGCaGC- -5'
27623 5' -58.9 NC_005882.1 + 14789 0.66 0.416699
Target:  5'- cGCCGaGCuGCucgugGAACGCuGCCu-CGUCGa -3'
miRNA:   3'- uCGGC-CG-CG-----CUUGCGuCGGuuGCAGC- -5'
27623 5' -58.9 NC_005882.1 + 31447 0.66 0.416699
Target:  5'- cGCgGGCuGCGccgGCAGCC-GCGUCa -3'
miRNA:   3'- uCGgCCG-CGCuugCGUCGGuUGCAGc -5'
27623 5' -58.9 NC_005882.1 + 18328 0.66 0.416699
Target:  5'- --aCGGCGagcuGAcCGCGGCCGcgucGCGUCGc -3'
miRNA:   3'- ucgGCCGCg---CUuGCGUCGGU----UGCAGC- -5'
27623 5' -58.9 NC_005882.1 + 12339 0.66 0.416699
Target:  5'- uGCCGGCgGCGccgaucggcAACGCugguucGGCC-AUGUCGa -3'
miRNA:   3'- uCGGCCG-CGC---------UUGCG------UCGGuUGCAGC- -5'
27623 5' -58.9 NC_005882.1 + 20939 0.66 0.407326
Target:  5'- uAGCCGGCGUccGCGCcgagcagguacGGCCGgaaaAUGUCc -3'
miRNA:   3'- -UCGGCCGCGcuUGCG-----------UCGGU----UGCAGc -5'
27623 5' -58.9 NC_005882.1 + 19933 0.66 0.407326
Target:  5'- cGgCGGcCGCGAACGCGGUgAucCGUUa -3'
miRNA:   3'- uCgGCC-GCGCUUGCGUCGgUu-GCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.