miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27624 5' -50.7 NC_005882.1 + 659 0.66 0.877325
Target:  5'- gCUCGGGcgcgAGAuUGCCgaCCGCAUGGCCGg -3'
miRNA:   3'- -GGGUUUa---UUU-GCGGg-GGUGUACUGGC- -5'
27624 5' -50.7 NC_005882.1 + 35089 0.66 0.877325
Target:  5'- aUCCAcugacAGCGCUCCC-UAUGAUCGa -3'
miRNA:   3'- -GGGUuuau-UUGCGGGGGuGUACUGGC- -5'
27624 5' -50.7 NC_005882.1 + 22067 0.66 0.869065
Target:  5'- gCCCuGGUGGGCuuCCgCCCGCcgGACUGc -3'
miRNA:   3'- -GGGuUUAUUUGc-GG-GGGUGuaCUGGC- -5'
27624 5' -50.7 NC_005882.1 + 27335 0.66 0.851733
Target:  5'- gCCCA----GAUGCCCCCgaagaacuGCuUGAUCGg -3'
miRNA:   3'- -GGGUuuauUUGCGGGGG--------UGuACUGGC- -5'
27624 5' -50.7 NC_005882.1 + 12885 0.66 0.842679
Target:  5'- gUCCGcGUgugGAACGCCgCCGCcgGcGCCGa -3'
miRNA:   3'- -GGGUuUA---UUUGCGGgGGUGuaC-UGGC- -5'
27624 5' -50.7 NC_005882.1 + 21970 0.67 0.80411
Target:  5'- gCCCGGAUAGcugaccagcaacGCGCCgaUCGCAUGGuuGa -3'
miRNA:   3'- -GGGUUUAUU------------UGCGGg-GGUGUACUggC- -5'
27624 5' -50.7 NC_005882.1 + 554 0.68 0.773042
Target:  5'- aCCCAucggaaAGUAGAuguucugucCGCCCCa--GUGGCCGg -3'
miRNA:   3'- -GGGU------UUAUUU---------GCGGGGgugUACUGGC- -5'
27624 5' -50.7 NC_005882.1 + 30899 0.68 0.762345
Target:  5'- gCCCucaacAACGCCUUCGCGguuaagGGCCGg -3'
miRNA:   3'- -GGGuuuauUUGCGGGGGUGUa-----CUGGC- -5'
27624 5' -50.7 NC_005882.1 + 10255 0.68 0.740518
Target:  5'- gCCGAGgauGACGCCgCCCAagaGUG-CCGc -3'
miRNA:   3'- gGGUUUau-UUGCGG-GGGUg--UACuGGC- -5'
27624 5' -50.7 NC_005882.1 + 22417 0.7 0.67255
Target:  5'- aCCAAGcccgcGCGCCCCaGCGUG-CCGg -3'
miRNA:   3'- gGGUUUauu--UGCGGGGgUGUACuGGC- -5'
27624 5' -50.7 NC_005882.1 + 33436 1.11 0.001527
Target:  5'- gCCCAAAUAAACGCCCCCACAUGACCGc -3'
miRNA:   3'- -GGGUUUAUUUGCGGGGGUGUACUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.