miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27626 3' -55.4 NC_005882.1 + 17876 0.66 0.641493
Target:  5'- ---aGCGC-CACCacgCGGcACCGGCAg -3'
miRNA:   3'- ccuaCGCGaGUGGca-GCCuUGGCUGU- -5'
27626 3' -55.4 NC_005882.1 + 2127 0.66 0.630288
Target:  5'- ---cGCGCUgCGCCGaUUGGAcaucACCGAUc -3'
miRNA:   3'- ccuaCGCGA-GUGGC-AGCCU----UGGCUGu -5'
27626 3' -55.4 NC_005882.1 + 17062 0.66 0.620205
Target:  5'- aGGAUGCGg-CACCcacgguaucaacggCGGAcACCGGCAg -3'
miRNA:   3'- -CCUACGCgaGUGGca------------GCCU-UGGCUGU- -5'
27626 3' -55.4 NC_005882.1 + 15718 0.66 0.619085
Target:  5'- ---gGCGCUUGCCGUCGuccuGGCCGGu- -3'
miRNA:   3'- ccuaCGCGAGUGGCAGCc---UUGGCUgu -5'
27626 3' -55.4 NC_005882.1 + 27818 0.66 0.619085
Target:  5'- cGAaGCGCgagCGCCGcgcguacaGGAGCUGACGu -3'
miRNA:   3'- cCUaCGCGa--GUGGCag------CCUUGGCUGU- -5'
27626 3' -55.4 NC_005882.1 + 26556 0.66 0.619085
Target:  5'- aGGAcuaCGUgCGCCGcgCGGAGCUGGCGa -3'
miRNA:   3'- -CCUac-GCGaGUGGCa-GCCUUGGCUGU- -5'
27626 3' -55.4 NC_005882.1 + 3602 0.66 0.617966
Target:  5'- cGGUGUcgcugcuguacccGCUCGCgGUCGGAAaccucCUGACGg -3'
miRNA:   3'- cCUACG-------------CGAGUGgCAGCCUU-----GGCUGU- -5'
27626 3' -55.4 NC_005882.1 + 19415 0.66 0.607894
Target:  5'- cGAUGCGCcgaccagcgcauUCGCCGaacgCGGGG-CGGCAa -3'
miRNA:   3'- cCUACGCG------------AGUGGCa---GCCUUgGCUGU- -5'
27626 3' -55.4 NC_005882.1 + 18261 0.66 0.596725
Target:  5'- cGGUG-GCaggCAUUGUCGGAAgCGACGa -3'
miRNA:   3'- cCUACgCGa--GUGGCAGCCUUgGCUGU- -5'
27626 3' -55.4 NC_005882.1 + 16009 0.67 0.574488
Target:  5'- cGGGUGCGUgcgcCGCCGcaaGGcGGCCGugAa -3'
miRNA:   3'- -CCUACGCGa---GUGGCag-CC-UUGGCugU- -5'
27626 3' -55.4 NC_005882.1 + 21305 0.67 0.574488
Target:  5'- cGAUGCGCcggUUGCCuUCGGAauggcuugGCCGGCc -3'
miRNA:   3'- cCUACGCG---AGUGGcAGCCU--------UGGCUGu -5'
27626 3' -55.4 NC_005882.1 + 16538 0.67 0.574488
Target:  5'- cGGAUGCGCUg--CG-CGGAugcuuGCCGACc -3'
miRNA:   3'- -CCUACGCGAgugGCaGCCU-----UGGCUGu -5'
27626 3' -55.4 NC_005882.1 + 2446 0.67 0.56344
Target:  5'- cGAUcGCGCUCACgGUCG--AUCGGCu -3'
miRNA:   3'- cCUA-CGCGAGUGgCAGCcuUGGCUGu -5'
27626 3' -55.4 NC_005882.1 + 35377 0.67 0.529588
Target:  5'- cGGAgGCGCUUcuggcagGCCuacCGGAGCCGAUc -3'
miRNA:   3'- -CCUaCGCGAG-------UGGca-GCCUUGGCUGu -5'
27626 3' -55.4 NC_005882.1 + 16436 0.68 0.488125
Target:  5'- uGGGUGCaGUUCACCGagaaguaCGGuucGCCGAUg -3'
miRNA:   3'- -CCUACG-CGAGUGGCa------GCCu--UGGCUGu -5'
27626 3' -55.4 NC_005882.1 + 12727 0.69 0.453265
Target:  5'- cGGcgGCGCUCGCCGgcgaccuguucgcCGaGAAagcCCGGCAc -3'
miRNA:   3'- -CCuaCGCGAGUGGCa------------GC-CUU---GGCUGU- -5'
27626 3' -55.4 NC_005882.1 + 12941 0.69 0.447253
Target:  5'- cGGcgGCGUUcCACaCG-CGGAcaaaGCCGGCAg -3'
miRNA:   3'- -CCuaCGCGA-GUG-GCaGCCU----UGGCUGU- -5'
27626 3' -55.4 NC_005882.1 + 29023 0.69 0.437334
Target:  5'- ---cGgGCUCAgggaCGUCGGcAACCGACGu -3'
miRNA:   3'- ccuaCgCGAGUg---GCAGCC-UUGGCUGU- -5'
27626 3' -55.4 NC_005882.1 + 21600 0.69 0.436349
Target:  5'- ---cGUGacaUCcuugaugACCGUCGGAACCGGCGa -3'
miRNA:   3'- ccuaCGCg--AG-------UGGCAGCCUUGGCUGU- -5'
27626 3' -55.4 NC_005882.1 + 32121 0.69 0.417882
Target:  5'- --cUGCGCgaucgUugUGUCGGcGCCGGCAu -3'
miRNA:   3'- ccuACGCGa----GugGCAGCCuUGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.