miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27626 5' -56.8 NC_005882.1 + 26771 0.66 0.572116
Target:  5'- gGCAUgaaGGUCgCGACGcUCGcGGCCGGCu -3'
miRNA:   3'- gCGUAg--CUAG-GCUGCuGGC-UCGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 13689 0.66 0.572116
Target:  5'- gGCGUCGAcaucgCCGAguacacgauCGAUugCGAGCCGGg -3'
miRNA:   3'- gCGUAGCUa----GGCU---------GCUG--GCUCGGCUg -5'
27626 5' -56.8 NC_005882.1 + 4930 0.66 0.561202
Target:  5'- gCGCGUCGAacucgcgccgcUCuCGcUGAUCGAGgCGGCa -3'
miRNA:   3'- -GCGUAGCU-----------AG-GCuGCUGGCUCgGCUG- -5'
27626 5' -56.8 NC_005882.1 + 31578 0.66 0.561202
Target:  5'- cCGCAggcUCGAUCgGgaACGGCUGgcAGCCGGg -3'
miRNA:   3'- -GCGU---AGCUAGgC--UGCUGGC--UCGGCUg -5'
27626 5' -56.8 NC_005882.1 + 20480 0.66 0.561202
Target:  5'- gGCAaggaagCGAUCCGcacgaagauCGGCCGccGGCCGAa -3'
miRNA:   3'- gCGUa-----GCUAGGCu--------GCUGGC--UCGGCUg -5'
27626 5' -56.8 NC_005882.1 + 28607 0.66 0.560113
Target:  5'- aCGCGaCGAUCgggaCGAuuaccggcgcaauCGACCGGGCCG-Cg -3'
miRNA:   3'- -GCGUaGCUAG----GCU-------------GCUGGCUCGGCuG- -5'
27626 5' -56.8 NC_005882.1 + 18976 0.66 0.550345
Target:  5'- uCGuCAUCGGccaUCCGcGCGACaaCGcGCCGGCg -3'
miRNA:   3'- -GC-GUAGCU---AGGC-UGCUG--GCuCGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 13601 0.66 0.549263
Target:  5'- gCGCAUCGucaucuggaucacGUCCucGACGACuuccuCGGGCCGcGCg -3'
miRNA:   3'- -GCGUAGC-------------UAGG--CUGCUG-----GCUCGGC-UG- -5'
27626 5' -56.8 NC_005882.1 + 26825 0.66 0.548181
Target:  5'- aGCGUCGcgaccuucaugCCGAucaCGGCCGuugcgaAGCCGACc -3'
miRNA:   3'- gCGUAGCua---------GGCU---GCUGGC------UCGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 13943 0.66 0.518195
Target:  5'- uCGCcgCGAUCaaGGCGAgcaCGgaAGCCGACg -3'
miRNA:   3'- -GCGuaGCUAGg-CUGCUg--GC--UCGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 23241 0.66 0.518195
Target:  5'- gCGCAUCGAUguaCG-CGAucgccCCGAGCUgGACg -3'
miRNA:   3'- -GCGUAGCUAg--GCuGCU-----GGCUCGG-CUG- -5'
27626 5' -56.8 NC_005882.1 + 22815 0.67 0.507642
Target:  5'- cCGCGUUGcUCUuguguACGGCCGGGUCGAg -3'
miRNA:   3'- -GCGUAGCuAGGc----UGCUGGCUCGGCUg -5'
27626 5' -56.8 NC_005882.1 + 25898 0.67 0.507642
Target:  5'- uCGCGUCcaugCCGgcaGCGACCaGuguGCCGACg -3'
miRNA:   3'- -GCGUAGcua-GGC---UGCUGG-Cu--CGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 9492 0.67 0.497181
Target:  5'- uGCGauuggCGcgCUGGCGGCCGcaAGCaCGACg -3'
miRNA:   3'- gCGUa----GCuaGGCUGCUGGC--UCG-GCUG- -5'
27626 5' -56.8 NC_005882.1 + 21121 0.67 0.497181
Target:  5'- -cCAUCGAagCCGACGaACUGgaagcgguucaGGCCGGCg -3'
miRNA:   3'- gcGUAGCUa-GGCUGC-UGGC-----------UCGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 15559 0.67 0.497181
Target:  5'- gGCA-CGAU-CGACGGCCucccgaagGAuGCCGACg -3'
miRNA:   3'- gCGUaGCUAgGCUGCUGG--------CU-CGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 19034 0.67 0.497181
Target:  5'- gGCGUCGG-CCGGCaACCugcaGGCCGAa -3'
miRNA:   3'- gCGUAGCUaGGCUGcUGGc---UCGGCUg -5'
27626 5' -56.8 NC_005882.1 + 11755 0.67 0.497181
Target:  5'- gGCAUggaccggaCGGaCUGACGcCCGAaGCCGACu -3'
miRNA:   3'- gCGUA--------GCUaGGCUGCuGGCU-CGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 22086 0.67 0.486818
Target:  5'- aGCAcgUCGAUggcaCCGccGCGGCCGuugAGCUGGCg -3'
miRNA:   3'- gCGU--AGCUA----GGC--UGCUGGC---UCGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 23778 0.67 0.486818
Target:  5'- uGguUCGAUCCGGCccgcaACCcgaaagagGAGCUGGCg -3'
miRNA:   3'- gCguAGCUAGGCUGc----UGG--------CUCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.