miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27626 5' -56.8 NC_005882.1 + 3329 0.74 0.181239
Target:  5'- uCGCcgCGcgaCGGCGGCCG-GCCGACg -3'
miRNA:   3'- -GCGuaGCuagGCUGCUGGCuCGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 3631 0.71 0.276592
Target:  5'- uGCGUCGAUCaCGucgcCGACCGgcuugucgagacGGCCGAa -3'
miRNA:   3'- gCGUAGCUAG-GCu---GCUGGC------------UCGGCUg -5'
27626 5' -56.8 NC_005882.1 + 4930 0.66 0.561202
Target:  5'- gCGCGUCGAacucgcgccgcUCuCGcUGAUCGAGgCGGCa -3'
miRNA:   3'- -GCGUAGCU-----------AG-GCuGCUGGCUCgGCUG- -5'
27626 5' -56.8 NC_005882.1 + 6489 0.68 0.416481
Target:  5'- gCGCGugagaagUCGGcaUCCGcUGACCcGGCCGACg -3'
miRNA:   3'- -GCGU-------AGCU--AGGCuGCUGGcUCGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 7430 0.7 0.345973
Target:  5'- uCGCGaCGA-CCG-UGACCGAcGCCGAUg -3'
miRNA:   3'- -GCGUaGCUaGGCuGCUGGCU-CGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 8781 0.69 0.362991
Target:  5'- aGCGagGucucgCCGAUGACCGGGCuguCGACg -3'
miRNA:   3'- gCGUagCua---GGCUGCUGGCUCG---GCUG- -5'
27626 5' -56.8 NC_005882.1 + 9492 0.67 0.497181
Target:  5'- uGCGauuggCGcgCUGGCGGCCGcaAGCaCGACg -3'
miRNA:   3'- gCGUa----GCuaGGCUGCUGGC--UCG-GCUG- -5'
27626 5' -56.8 NC_005882.1 + 10996 0.72 0.262768
Target:  5'- gCGCAgCGAacggCUGACGAUCGAgGCCGAg -3'
miRNA:   3'- -GCGUaGCUa---GGCUGCUGGCU-CGGCUg -5'
27626 5' -56.8 NC_005882.1 + 11743 0.69 0.368208
Target:  5'- cCGCgAUCGAgccaguacgcgaCGACGGCCGcgaGGCUGACg -3'
miRNA:   3'- -GCG-UAGCUag----------GCUGCUGGC---UCGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 11755 0.67 0.497181
Target:  5'- gGCAUggaccggaCGGaCUGACGcCCGAaGCCGACu -3'
miRNA:   3'- gCGUA--------GCUaGGCUGCuGGCU-CGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 13601 0.66 0.549263
Target:  5'- gCGCAUCGucaucuggaucacGUCCucGACGACuuccuCGGGCCGcGCg -3'
miRNA:   3'- -GCGUAGC-------------UAGG--CUGCUG-----GCUCGGC-UG- -5'
27626 5' -56.8 NC_005882.1 + 13689 0.66 0.572116
Target:  5'- gGCGUCGAcaucgCCGAguacacgauCGAUugCGAGCCGGg -3'
miRNA:   3'- gCGUAGCUa----GGCU---------GCUG--GCUCGGCUg -5'
27626 5' -56.8 NC_005882.1 + 13943 0.66 0.518195
Target:  5'- uCGCcgCGAUCaaGGCGAgcaCGgaAGCCGACg -3'
miRNA:   3'- -GCGuaGCUAGg-CUGCUg--GC--UCGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 14244 0.72 0.236811
Target:  5'- aGCAgCGGccugUCCGAUGACgCG-GCCGACg -3'
miRNA:   3'- gCGUaGCU----AGGCUGCUG-GCuCGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 15559 0.67 0.497181
Target:  5'- gGCA-CGAU-CGACGGCCucccgaagGAuGCCGACg -3'
miRNA:   3'- gCGUaGCUAgGCUGCUGG--------CU-CGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 15636 0.69 0.389588
Target:  5'- gCGCAUCccggacGUCCGcGCGACCG-GCCagGACg -3'
miRNA:   3'- -GCGUAGc-----UAGGC-UGCUGGCuCGG--CUG- -5'
27626 5' -56.8 NC_005882.1 + 16580 0.73 0.209653
Target:  5'- aGCAUCGAgauuaaggaagcagCCGGCaaGACCGGuagcGCCGACg -3'
miRNA:   3'- gCGUAGCUa-------------GGCUG--CUGGCU----CGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 17867 0.71 0.269609
Target:  5'- gGCAucaaggUCGAggcggCCGGCGACCGccucGGCaCGACg -3'
miRNA:   3'- gCGU------AGCUa----GGCUGCUGGC----UCG-GCUG- -5'
27626 5' -56.8 NC_005882.1 + 18976 0.66 0.550345
Target:  5'- uCGuCAUCGGccaUCCGcGCGACaaCGcGCCGGCg -3'
miRNA:   3'- -GC-GUAGCU---AGGC-UGCUG--GCuCGGCUG- -5'
27626 5' -56.8 NC_005882.1 + 19034 0.67 0.497181
Target:  5'- gGCGUCGG-CCGGCaACCugcaGGCCGAa -3'
miRNA:   3'- gCGUAGCUaGGCUGcUGGc---UCGGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.