miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27627 5' -53 NC_005882.1 + 24452 0.66 0.752739
Target:  5'- uCGCcgCCGaCGcG-GAAgAUGUUCGCCAGa -3'
miRNA:   3'- -GCGa-GGC-GC-CgCUUgUAUAAGUGGUC- -5'
27627 5' -53 NC_005882.1 + 10101 0.66 0.742969
Target:  5'- gCGCUUggUGCGGUGGACuugaucgcuacgcgGUUCAgCCAGg -3'
miRNA:   3'- -GCGAG--GCGCCGCUUGua------------UAAGU-GGUC- -5'
27627 5' -53 NC_005882.1 + 26616 0.66 0.741877
Target:  5'- aGCUCCgcGCGGCGcACGUAgUC-CUGGu -3'
miRNA:   3'- gCGAGG--CGCCGCuUGUAUaAGuGGUC- -5'
27627 5' -53 NC_005882.1 + 34861 0.66 0.741877
Target:  5'- gCGCacuggCCGCauagccGGCGGGCAUGUuggCGCCGc -3'
miRNA:   3'- -GCGa----GGCG------CCGCUUGUAUAa--GUGGUc -5'
27627 5' -53 NC_005882.1 + 27658 0.66 0.730894
Target:  5'- cCGCggCCGCGGCcuGCG---UCGCCAu -3'
miRNA:   3'- -GCGa-GGCGCCGcuUGUauaAGUGGUc -5'
27627 5' -53 NC_005882.1 + 35436 0.66 0.719802
Target:  5'- gGUgUUGCuGGUGAAUAUGUUCGCCGc -3'
miRNA:   3'- gCGaGGCG-CCGCUUGUAUAAGUGGUc -5'
27627 5' -53 NC_005882.1 + 27611 0.66 0.708616
Target:  5'- cCGCggCCGCGGCGucccuGCAgcg-CAUCAa -3'
miRNA:   3'- -GCGa-GGCGCCGCu----UGUauaaGUGGUc -5'
27627 5' -53 NC_005882.1 + 29343 0.66 0.705244
Target:  5'- gGCUCgCGUGGCGAagcggaaccaccugACGc--UCACCGGc -3'
miRNA:   3'- gCGAG-GCGCCGCU--------------UGUauaAGUGGUC- -5'
27627 5' -53 NC_005882.1 + 11871 0.66 0.697348
Target:  5'- aGCauggCCGCGGCGAAC------ACCAGc -3'
miRNA:   3'- gCGa---GGCGCCGCUUGuauaagUGGUC- -5'
27627 5' -53 NC_005882.1 + 24819 0.67 0.663181
Target:  5'- cCGCUUCGaguCGGCGAGguCGaGUUCGCCGa -3'
miRNA:   3'- -GCGAGGC---GCCGCUU--GUaUAAGUGGUc -5'
27627 5' -53 NC_005882.1 + 12732 0.67 0.651713
Target:  5'- gCGCUCgC-CGGCGA-CcUGUUCGCCGa -3'
miRNA:   3'- -GCGAG-GcGCCGCUuGuAUAAGUGGUc -5'
27627 5' -53 NC_005882.1 + 14148 0.68 0.617235
Target:  5'- aCGCUggcCCGC-GCGAGCGUGa--ACCAGa -3'
miRNA:   3'- -GCGA---GGCGcCGCUUGUAUaagUGGUC- -5'
27627 5' -53 NC_005882.1 + 34771 0.68 0.605756
Target:  5'- uGCUCCgaacguguacaGCGGCGccAACAUGccCGCCGGc -3'
miRNA:   3'- gCGAGG-----------CGCCGC--UUGUAUaaGUGGUC- -5'
27627 5' -53 NC_005882.1 + 3498 0.68 0.594302
Target:  5'- gGC-CCGCGGCGAG---AUUCAUCGc -3'
miRNA:   3'- gCGaGGCGCCGCUUguaUAAGUGGUc -5'
27627 5' -53 NC_005882.1 + 25109 0.68 0.594302
Target:  5'- gGCUuuGCGGCcGGCucgggCGCCGGg -3'
miRNA:   3'- gCGAggCGCCGcUUGuauaaGUGGUC- -5'
27627 5' -53 NC_005882.1 + 26737 0.69 0.526639
Target:  5'- gCGCUggaucaGCGGCGugacCGUGUUCAUCAGg -3'
miRNA:   3'- -GCGAgg----CGCCGCuu--GUAUAAGUGGUC- -5'
27627 5' -53 NC_005882.1 + 28109 0.69 0.526639
Target:  5'- gCGCUcaCCGCcGCGcGCAgcUUCGCCAGc -3'
miRNA:   3'- -GCGA--GGCGcCGCuUGUauAAGUGGUC- -5'
27627 5' -53 NC_005882.1 + 33550 0.7 0.504695
Target:  5'- uCGCUCUGaaugcgGGCGAGCAagcgcaGUUCAUCAGc -3'
miRNA:   3'- -GCGAGGCg-----CCGCUUGUa-----UAAGUGGUC- -5'
27627 5' -53 NC_005882.1 + 28655 0.7 0.493871
Target:  5'- aGCUCuCGaCGGCGAGCAgcg-CGCUAa -3'
miRNA:   3'- gCGAG-GC-GCCGCUUGUauaaGUGGUc -5'
27627 5' -53 NC_005882.1 + 19693 0.71 0.441474
Target:  5'- uGCUUCGgGGCGAGCGUGc-CGCCc- -3'
miRNA:   3'- gCGAGGCgCCGCUUGUAUaaGUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.