miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27628 3' -54.6 NC_005882.1 + 29184 0.66 0.657939
Target:  5'- -cGCGCCGUUGcUCGC-GuGCGGcCGCu -3'
miRNA:   3'- guUGUGGCAACaGGUGaC-CGCCuGCG- -5'
27628 3' -54.6 NC_005882.1 + 7415 0.66 0.646632
Target:  5'- cCGACGCCGaUGUuccgggcaugcCCGCaaUGGUcGACGCa -3'
miRNA:   3'- -GUUGUGGCaACA-----------GGUG--ACCGcCUGCG- -5'
27628 3' -54.6 NC_005882.1 + 12550 0.66 0.63531
Target:  5'- cCGGCGCUGcgGcgaucggCgCACUGGCGGcugGCGCg -3'
miRNA:   3'- -GUUGUGGCaaCa------G-GUGACCGCC---UGCG- -5'
27628 3' -54.6 NC_005882.1 + 31076 0.66 0.623986
Target:  5'- gCAGCGCgGcuc-CCACcGGCGGAuCGCg -3'
miRNA:   3'- -GUUGUGgCaacaGGUGaCCGCCU-GCG- -5'
27628 3' -54.6 NC_005882.1 + 23214 0.66 0.623986
Target:  5'- aCGACGCuCGcgcaggCGCUGGcCGGGCGCg -3'
miRNA:   3'- -GUUGUG-GCaacag-GUGACC-GCCUGCG- -5'
27628 3' -54.6 NC_005882.1 + 5429 0.67 0.556546
Target:  5'- aGGCGCCGUcgaucgaugUGUgCCGCgaauUGGCGGuuGCc -3'
miRNA:   3'- gUUGUGGCA---------ACA-GGUG----ACCGCCugCG- -5'
27628 3' -54.6 NC_005882.1 + 19720 0.68 0.523566
Target:  5'- gCGAUGCCaagcagCCGCUGGCGaGCGCa -3'
miRNA:   3'- -GUUGUGGcaaca-GGUGACCGCcUGCG- -5'
27628 3' -54.6 NC_005882.1 + 32287 0.68 0.512735
Target:  5'- -uACACCGcgcccaUUCGCUGGCGGucagcACGCg -3'
miRNA:   3'- guUGUGGCaac---AGGUGACCGCC-----UGCG- -5'
27628 3' -54.6 NC_005882.1 + 5261 0.69 0.470409
Target:  5'- aCGAUGCCGcccaggugGUCCugACUGGCgaggacGGGCGCg -3'
miRNA:   3'- -GUUGUGGCaa------CAGG--UGACCG------CCUGCG- -5'
27628 3' -54.6 NC_005882.1 + 636 0.69 0.460105
Target:  5'- gCAugGCCGg---CCACUggGGCGGACa- -3'
miRNA:   3'- -GUugUGGCaacaGGUGA--CCGCCUGcg -5'
27628 3' -54.6 NC_005882.1 + 9489 0.69 0.460105
Target:  5'- -cGCugCGaUUGgCgCGCUGGCGGcCGCa -3'
miRNA:   3'- guUGugGC-AACaG-GUGACCGCCuGCG- -5'
27628 3' -54.6 NC_005882.1 + 234 1.12 0.000444
Target:  5'- gCAACACCGUUGUCCACUGGCGGACGCg -3'
miRNA:   3'- -GUUGUGGCAACAGGUGACCGCCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.