miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27628 5' -56.6 NC_005882.1 + 28835 0.66 0.579268
Target:  5'- -cGCGaACCCCaGCGuGCCGAUUacgGCg -3'
miRNA:   3'- gcUGC-UGGGGaCGCcUGGCUAAga-CG- -5'
27628 5' -56.6 NC_005882.1 + 3234 0.66 0.579268
Target:  5'- gGACGACUUCgcgagguaCGGGCCGAU-CUGg -3'
miRNA:   3'- gCUGCUGGGGac------GCCUGGCUAaGACg -5'
27628 5' -56.6 NC_005882.1 + 20551 0.66 0.557394
Target:  5'- cCGGCGGCCgaucuuCgUGCGGAUCGcUUCcuUGCc -3'
miRNA:   3'- -GCUGCUGG------GgACGCCUGGCuAAG--ACG- -5'
27628 5' -56.6 NC_005882.1 + 12332 0.67 0.493455
Target:  5'- uGACGGCUgCCgGCGGcGCCGAU-CgGCa -3'
miRNA:   3'- gCUGCUGG-GGaCGCC-UGGCUAaGaCG- -5'
27628 5' -56.6 NC_005882.1 + 4576 0.67 0.493455
Target:  5'- uCGACGACCucgaCCUGCGGGagCGaAUUCUc- -3'
miRNA:   3'- -GCUGCUGG----GGACGCCUg-GC-UAAGAcg -5'
27628 5' -56.6 NC_005882.1 + 4859 0.67 0.483114
Target:  5'- gCGuCGACUggagcGCGGACCGGUUCcGCu -3'
miRNA:   3'- -GCuGCUGGgga--CGCCUGGCUAAGaCG- -5'
27628 5' -56.6 NC_005882.1 + 34530 0.67 0.483114
Target:  5'- cCGACGGCCCgCUGCacaaacGCCGucgUUGCg -3'
miRNA:   3'- -GCUGCUGGG-GACGcc----UGGCuaaGACG- -5'
27628 5' -56.6 NC_005882.1 + 21692 0.69 0.386205
Target:  5'- uCGGCGACCCgaGCGGcCCGGcgacGCc -3'
miRNA:   3'- -GCUGCUGGGgaCGCCuGGCUaagaCG- -5'
27628 5' -56.6 NC_005882.1 + 4707 0.69 0.377238
Target:  5'- uGuuGACCCgCUcGCGGGCCGGUaagcUCgGCg -3'
miRNA:   3'- gCugCUGGG-GA-CGCCUGGCUA----AGaCG- -5'
27628 5' -56.6 NC_005882.1 + 16745 0.69 0.368413
Target:  5'- uCGACGucGCCUCgGUGGuuUGGUUCUGCc -3'
miRNA:   3'- -GCUGC--UGGGGaCGCCugGCUAAGACG- -5'
27628 5' -56.6 NC_005882.1 + 19275 0.69 0.35973
Target:  5'- uGACGucgcgcagGCCCUUGaGGGCCGGcggCUGCg -3'
miRNA:   3'- gCUGC--------UGGGGACgCCUGGCUaa-GACG- -5'
27628 5' -56.6 NC_005882.1 + 14266 0.7 0.351192
Target:  5'- uCGACGGCCgCgGCGG-CCGcUUCcGCg -3'
miRNA:   3'- -GCUGCUGGgGaCGCCuGGCuAAGaCG- -5'
27628 5' -56.6 NC_005882.1 + 22715 0.7 0.326448
Target:  5'- cCGGCGAg--CUGCGGGCCGAa-CUGCg -3'
miRNA:   3'- -GCUGCUgggGACGCCUGGCUaaGACG- -5'
27628 5' -56.6 NC_005882.1 + 268 1.13 0.000275
Target:  5'- aCGACGACCCCUGCGGACCGAUUCUGCg -3'
miRNA:   3'- -GCUGCUGGGGACGCCUGGCUAAGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.