miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2763 3' -53 NC_001491.2 + 139805 0.66 0.983622
Target:  5'- cGGGAUCGGggaGACGccgCCGGC-GGACGc -3'
miRNA:   3'- uCCUUGGCU---UUGCa--GGCUGaCCUGCu -5'
2763 3' -53 NC_001491.2 + 112996 0.66 0.981649
Target:  5'- cGGGGgUGAGACG-CgGGCUGGGgGGg -3'
miRNA:   3'- uCCUUgGCUUUGCaGgCUGACCUgCU- -5'
2763 3' -53 NC_001491.2 + 17492 0.66 0.981649
Target:  5'- -aGAACCGAggaacAGCGcCUGGCUcaGGGCGGu -3'
miRNA:   3'- ucCUUGGCU-----UUGCaGGCUGA--CCUGCU- -5'
2763 3' -53 NC_001491.2 + 115433 0.66 0.981649
Target:  5'- gGGGAGCUGGcggccAGCGgCCcGCUGaGACGGa -3'
miRNA:   3'- -UCCUUGGCU-----UUGCaGGcUGAC-CUGCU- -5'
2763 3' -53 NC_001491.2 + 145577 0.66 0.981649
Target:  5'- gGGGAGCCGGugagGGC-UCCGGCccGGCGGa -3'
miRNA:   3'- -UCCUUGGCU----UUGcAGGCUGacCUGCU- -5'
2763 3' -53 NC_001491.2 + 147041 0.66 0.979503
Target:  5'- cGGAGCCGGAGaagggcucgcCGcCgGGCgaGGACGAu -3'
miRNA:   3'- uCCUUGGCUUU----------GCaGgCUGa-CCUGCU- -5'
2763 3' -53 NC_001491.2 + 145406 0.66 0.971949
Target:  5'- uGGAGCCGGAGCGggugcgCCGGg-GGaaGCGGc -3'
miRNA:   3'- uCCUUGGCUUUGCa-----GGCUgaCC--UGCU- -5'
2763 3' -53 NC_001491.2 + 111682 0.67 0.969035
Target:  5'- uGGGAcuGCCGggGCuccCCGACugcagccacUGGugGAc -3'
miRNA:   3'- -UCCU--UGGCuuUGca-GGCUG---------ACCugCU- -5'
2763 3' -53 NC_001491.2 + 117323 0.67 0.962572
Target:  5'- gGGGGACCGGGgacucGCGggaCgGGCugUGGGCGAc -3'
miRNA:   3'- -UCCUUGGCUU-----UGCa--GgCUG--ACCUGCU- -5'
2763 3' -53 NC_001491.2 + 148050 0.68 0.951208
Target:  5'- gAGG-GCCGAGACGUCCG---GGGCc- -3'
miRNA:   3'- -UCCuUGGCUUUGCAGGCugaCCUGcu -5'
2763 3' -53 NC_001491.2 + 137529 0.68 0.942469
Target:  5'- uGGAcgagGCUuggGAGACGUCCGguaGCUGGuCGAc -3'
miRNA:   3'- uCCU----UGG---CUUUGCAGGC---UGACCuGCU- -5'
2763 3' -53 NC_001491.2 + 140241 0.68 0.932772
Target:  5'- cGGGGACgGGGACGggggCgGGCgcGGACGGg -3'
miRNA:   3'- -UCCUUGgCUUUGCa---GgCUGa-CCUGCU- -5'
2763 3' -53 NC_001491.2 + 121475 0.69 0.927559
Target:  5'- aGGGGGCUGGuggacGGCGUCCcccGCUGGGCc- -3'
miRNA:   3'- -UCCUUGGCU-----UUGCAGGc--UGACCUGcu -5'
2763 3' -53 NC_001491.2 + 20319 0.71 0.821556
Target:  5'- uGGGGCCGGGgcGCGUCCGcCUGGcCu- -3'
miRNA:   3'- uCCUUGGCUU--UGCAGGCuGACCuGcu -5'
2763 3' -53 NC_001491.2 + 147410 0.72 0.803964
Target:  5'- aAGGAgGCCGAGGC-UCCGGcCUGGGCc- -3'
miRNA:   3'- -UCCU-UGGCUUUGcAGGCU-GACCUGcu -5'
2763 3' -53 NC_001491.2 + 144906 0.81 0.322035
Target:  5'- cGGAGCCGGgcugggugccgggGACG-CCGGCUGGGCGGc -3'
miRNA:   3'- uCCUUGGCU-------------UUGCaGGCUGACCUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.