miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27630 3' -60.2 NC_005882.1 + 16661 0.66 0.393267
Target:  5'- cGUCGGCGCUaccgGUCuuGCCGGCUg- -3'
miRNA:   3'- cCAGCCGCGGcua-CAGc-CGGUCGAgc -5'
27630 3' -60.2 NC_005882.1 + 31597 0.66 0.375632
Target:  5'- cGGcUGGCaGCCGggGcaacUCGGCUcGCUCGu -3'
miRNA:   3'- -CCaGCCG-CGGCuaC----AGCCGGuCGAGC- -5'
27630 3' -60.2 NC_005882.1 + 23071 0.66 0.375632
Target:  5'- --aCGGCGCCGAUGauguccgCGGCCGuGaccuUCGu -3'
miRNA:   3'- ccaGCCGCGGCUACa------GCCGGU-Cg---AGC- -5'
27630 3' -60.2 NC_005882.1 + 19094 0.66 0.367873
Target:  5'- cGUCGGCGCCGGgcgcuacaagaagaUCaGcGCCAGCUUc -3'
miRNA:   3'- cCAGCCGCGGCUac------------AG-C-CGGUCGAGc -5'
27630 3' -60.2 NC_005882.1 + 22456 0.66 0.358539
Target:  5'- uGGUcgaCGGCGCUG----CGGCCGGCUUc -3'
miRNA:   3'- -CCA---GCCGCGGCuacaGCCGGUCGAGc -5'
27630 3' -60.2 NC_005882.1 + 29996 0.67 0.341998
Target:  5'- -cUCGGCGCuCGccGUCcaGGCCGGCa-- -3'
miRNA:   3'- ccAGCCGCG-GCuaCAG--CCGGUCGagc -5'
27630 3' -60.2 NC_005882.1 + 3281 0.67 0.326015
Target:  5'- cGUCGcGCGgCGAgaucucuUCGGCCAGCacgCGg -3'
miRNA:   3'- cCAGC-CGCgGCUac-----AGCCGGUCGa--GC- -5'
27630 3' -60.2 NC_005882.1 + 25170 0.67 0.326015
Target:  5'- -cUCGG-GCCGGccGUCguGGCCGGCUCc -3'
miRNA:   3'- ccAGCCgCGGCUa-CAG--CCGGUCGAGc -5'
27630 3' -60.2 NC_005882.1 + 32023 0.67 0.318234
Target:  5'- cGGUcagCGGcCGCCGAcgcucGUCGGUCAGgUUGu -3'
miRNA:   3'- -CCA---GCC-GCGGCUa----CAGCCGGUCgAGC- -5'
27630 3' -60.2 NC_005882.1 + 11112 0.67 0.310594
Target:  5'- aGGUCGGCuucuggcaGCgGAUGUUcucCCAGCUCu -3'
miRNA:   3'- -CCAGCCG--------CGgCUACAGcc-GGUCGAGc -5'
27630 3' -60.2 NC_005882.1 + 31377 0.67 0.303093
Target:  5'- uGGUCGGCGUgacgCGGcUGcCGGCgCAGCcCGc -3'
miRNA:   3'- -CCAGCCGCG----GCU-ACaGCCG-GUCGaGC- -5'
27630 3' -60.2 NC_005882.1 + 33091 0.68 0.288513
Target:  5'- cGGcaaGGCuuGCCGAacugGUCGGCCAagcgcccggcauGCUCGa -3'
miRNA:   3'- -CCag-CCG--CGGCUa---CAGCCGGU------------CGAGC- -5'
27630 3' -60.2 NC_005882.1 + 17248 0.68 0.281432
Target:  5'- cGUCcGCGUCGAggcUCGGauaCAGCUCGg -3'
miRNA:   3'- cCAGcCGCGGCUac-AGCCg--GUCGAGC- -5'
27630 3' -60.2 NC_005882.1 + 25614 0.68 0.280731
Target:  5'- gGGcUCGGCGCCGAcaUGcUCGGCacauacgcgacggCGGCUg- -3'
miRNA:   3'- -CC-AGCCGCGGCU--AC-AGCCG-------------GUCGAgc -5'
27630 3' -60.2 NC_005882.1 + 24803 0.68 0.274489
Target:  5'- aGGUCGaguuCGCCGAUGUCuucgacGGUCAGUUgGu -3'
miRNA:   3'- -CCAGCc---GCGGCUACAG------CCGGUCGAgC- -5'
27630 3' -60.2 NC_005882.1 + 12872 0.68 0.274489
Target:  5'- --cCGGCGCCGGg--CGGUauuGGCUCGu -3'
miRNA:   3'- ccaGCCGCGGCUacaGCCGg--UCGAGC- -5'
27630 3' -60.2 NC_005882.1 + 16197 0.68 0.260357
Target:  5'- aGGUCGGCaacuacaucguGCCGAUcgacgucGUCGGCaAGC-CGg -3'
miRNA:   3'- -CCAGCCG-----------CGGCUA-------CAGCCGgUCGaGC- -5'
27630 3' -60.2 NC_005882.1 + 8891 0.69 0.254485
Target:  5'- gGGUCGGCGCaGAUuUCG-CCAGcCUUGa -3'
miRNA:   3'- -CCAGCCGCGgCUAcAGCcGGUC-GAGC- -5'
27630 3' -60.2 NC_005882.1 + 19877 0.69 0.254485
Target:  5'- uGUCGGCGCCcGUcGUCGucacGCCGGCgCGc -3'
miRNA:   3'- cCAGCCGCGGcUA-CAGC----CGGUCGaGC- -5'
27630 3' -60.2 NC_005882.1 + 7241 0.69 0.241824
Target:  5'- gGGUCGGUGCaa---UCGGCCGGCa-- -3'
miRNA:   3'- -CCAGCCGCGgcuacAGCCGGUCGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.