Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27630 | 5' | -54.6 | NC_005882.1 | + | 670 | 1.11 | 0.000523 |
Target: 5'- gGGCGACCUGCAGAGACAAGUCGACCAg -3' miRNA: 3'- -CCGCUGGACGUCUCUGUUCAGCUGGU- -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 32978 | 0.66 | 0.648369 |
Target: 5'- cGGCGGCCgcacGCgcuaccugaAGGcGCAGGUCGAgCAg -3' miRNA: 3'- -CCGCUGGa---CG---------UCUcUGUUCAGCUgGU- -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 20443 | 0.66 | 0.625643 |
Target: 5'- cGCGGCCgGCAGcGAUccGGUCGGCg- -3' miRNA: 3'- cCGCUGGaCGUCuCUGu-UCAGCUGgu -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 22115 | 0.67 | 0.602942 |
Target: 5'- aGCGACaaGUuucucGGCGAGUCGGCCGg -3' miRNA: 3'- cCGCUGgaCGucu--CUGUUCAGCUGGU- -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 3695 | 0.67 | 0.591626 |
Target: 5'- aGGCGcggGCCgucgaGCGGGGcCAGcUCGACCAu -3' miRNA: 3'- -CCGC---UGGa----CGUCUCuGUUcAGCUGGU- -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 22975 | 0.67 | 0.557934 |
Target: 5'- aGGCGACCUacgacuacGCGGAcccGACGaaGGUcaCGGCCGc -3' miRNA: 3'- -CCGCUGGA--------CGUCU---CUGU--UCA--GCUGGU- -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 19043 | 0.68 | 0.491395 |
Target: 5'- cGGCaACCUGCAGGccGAacccaccCAGGUCGAUCc -3' miRNA: 3'- -CCGcUGGACGUCU--CU-------GUUCAGCUGGu -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 16948 | 0.69 | 0.44072 |
Target: 5'- uGCGuacaACCUGCAGgaugcgaccuGGACGAG-CGGCCGc -3' miRNA: 3'- cCGC----UGGACGUC----------UCUGUUCaGCUGGU- -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 17932 | 0.7 | 0.391277 |
Target: 5'- cGGCGAgCUGCGcGAGgucgcgacguuccGCAcGUCGACCc -3' miRNA: 3'- -CCGCUgGACGU-CUC-------------UGUuCAGCUGGu -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 26008 | 0.73 | 0.268939 |
Target: 5'- cGCGGCCUaCGGcGGCAAGcUCGGCCGg -3' miRNA: 3'- cCGCUGGAcGUCuCUGUUC-AGCUGGU- -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 17350 | 0.71 | 0.355992 |
Target: 5'- cGGCGGCagcuucaUGCAGuAGcCgAGGUCGACCGc -3' miRNA: 3'- -CCGCUGg------ACGUC-UCuG-UUCAGCUGGU- -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 16193 | 0.69 | 0.444747 |
Target: 5'- cGGCGuCCaGCAucucggucacgauccGAGACAGGUCGAgguCCGc -3' miRNA: 3'- -CCGCuGGaCGU---------------CUCUGUUCAGCU---GGU- -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 18808 | 0.67 | 0.591626 |
Target: 5'- cGCGA--UGCAGGGagcgcaGCAGGUCGaACCAa -3' miRNA: 3'- cCGCUggACGUCUC------UGUUCAGC-UGGU- -5' |
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27630 | 5' | -54.6 | NC_005882.1 | + | 2191 | 0.67 | 0.602942 |
Target: 5'- aGGCGAUCgucacGCAGGcguuugcgaccGACAAGgaaGGCCAg -3' miRNA: 3'- -CCGCUGGa----CGUCU-----------CUGUUCag-CUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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