miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27631 5' -60.6 NC_005882.1 + 5249 0.66 0.317705
Target:  5'- aGGUGGUCcugacugGCGAGGAcgGGCGCGagacGUAc -3'
miRNA:   3'- -CCACCGG-------CGCUCCU--UCGCGCgu--CGUu -5'
27631 5' -60.6 NC_005882.1 + 27174 0.66 0.310684
Target:  5'- -cUGGCCGCccAGGAcGCGgGcCAGCAGc -3'
miRNA:   3'- ccACCGGCGc-UCCUuCGCgC-GUCGUU- -5'
27631 5' -60.6 NC_005882.1 + 14191 0.66 0.288134
Target:  5'- aGGUgcaGGCaCGCGcGGAAGCGgccgcCGCGGCc- -3'
miRNA:   3'- -CCA---CCG-GCGCuCCUUCGC-----GCGUCGuu -5'
27631 5' -60.6 NC_005882.1 + 25561 0.67 0.273829
Target:  5'- --cGGCCcuuGCGAcccGGcuGGCGCGCGGCGc -3'
miRNA:   3'- ccaCCGG---CGCU---CCu-UCGCGCGUCGUu -5'
27631 5' -60.6 NC_005882.1 + 9402 0.67 0.273829
Target:  5'- ---uGCCGCGAGGuagcuGGCGUcCGGCGAa -3'
miRNA:   3'- ccacCGGCGCUCCu----UCGCGcGUCGUU- -5'
27631 5' -60.6 NC_005882.1 + 26706 0.67 0.252789
Target:  5'- --aGGuCCGUGAGcGAcggcagcAGCGCGCGGCc- -3'
miRNA:   3'- ccaCC-GGCGCUC-CU-------UCGCGCGUCGuu -5'
27631 5' -60.6 NC_005882.1 + 10672 0.67 0.246934
Target:  5'- --cGGCaGCGGcGGAGGCG-GCGGCAGc -3'
miRNA:   3'- ccaCCGgCGCU-CCUUCGCgCGUCGUU- -5'
27631 5' -60.6 NC_005882.1 + 18709 0.67 0.246934
Target:  5'- gGGUGGUCc---GGAGGCGCGCAGa-- -3'
miRNA:   3'- -CCACCGGcgcuCCUUCGCGCGUCguu -5'
27631 5' -60.6 NC_005882.1 + 26146 0.68 0.228228
Target:  5'- --cGGCCGCGA--AGGCGC-CGGCAGu -3'
miRNA:   3'- ccaCCGGCGCUccUUCGCGcGUCGUU- -5'
27631 5' -60.6 NC_005882.1 + 26759 0.69 0.184149
Target:  5'- gGGcGGCCGCGAacu-GCGCGguGCGc -3'
miRNA:   3'- -CCaCCGGCGCUccuuCGCGCguCGUu -5'
27631 5' -60.6 NC_005882.1 + 31201 0.69 0.17437
Target:  5'- cGUGGCCGacuacGAGGCGCGCacuGGCAAg -3'
miRNA:   3'- cCACCGGCgcuc-CUUCGCGCG---UCGUU- -5'
27631 5' -60.6 NC_005882.1 + 6849 0.7 0.151924
Target:  5'- -cUGGCCGCGAaGAAGaCGCGCGuCAAg -3'
miRNA:   3'- ccACCGGCGCUcCUUC-GCGCGUcGUU- -5'
27631 5' -60.6 NC_005882.1 + 8292 0.71 0.139746
Target:  5'- --cGGCCGUucGAGGAcGCGUGCGGUg- -3'
miRNA:   3'- ccaCCGGCG--CUCCUuCGCGCGUCGuu -5'
27631 5' -60.6 NC_005882.1 + 1299 1.08 0.00017
Target:  5'- cGGUGGCCGCGAGGAAGCGCGCAGCAAa -3'
miRNA:   3'- -CCACCGGCGCUCCUUCGCGCGUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.