Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27632 | 3' | -52.9 | NC_005882.1 | + | 1182 | 0.66 | 0.754222 |
Target: 5'- cCGCuucGAAGGaaaAUUCGUCGuauUCAaCGACg -3' miRNA: 3'- -GCG---CUUCCg--UGAGCAGCu--AGUaGCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 2185 | 1.1 | 0.001033 |
Target: 5'- uCGCGAAGGCACUCGUCGAUCAUCGACu -3' miRNA: 3'- -GCGCUUCCGUGAGCAGCUAGUAGCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 2265 | 0.66 | 0.754222 |
Target: 5'- aCGCuugcAGGcCGCgaaGUCGAUgAUCGACg -3' miRNA: 3'- -GCGcu--UCC-GUGag-CAGCUAgUAGCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 2444 | 0.68 | 0.642382 |
Target: 5'- gGCGAucGCGCUCa-CGGUCgAUCGGCu -3' miRNA: 3'- gCGCUucCGUGAGcaGCUAG-UAGCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 3242 | 0.66 | 0.754222 |
Target: 5'- uCGCG-AGGUACgggcCGaUCugGAUCGUCGGCc -3' miRNA: 3'- -GCGCuUCCGUGa---GC-AG--CUAGUAGCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 3873 | 0.7 | 0.529275 |
Target: 5'- uCGCGAucGGCAgcgcgugcgcUUCGUCGAUCA-CGAg -3' miRNA: 3'- -GCGCUu-CCGU----------GAGCAGCUAGUaGCUg -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 5235 | 0.66 | 0.754222 |
Target: 5'- gGCGAggacGGGCGCgagacguacuUCGUCGuuccgcUCAUCGuACg -3' miRNA: 3'- gCGCU----UCCGUG----------AGCAGCu-----AGUAGC-UG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 5639 | 0.69 | 0.573983 |
Target: 5'- aGCGAGcGGCACagGUUGcgcGUCAUgGACg -3' miRNA: 3'- gCGCUU-CCGUGagCAGC---UAGUAgCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 6794 | 0.66 | 0.743432 |
Target: 5'- gCGCGucuucuucgcGGCcaGCUCGUCGAUCuUCG-Cg -3' miRNA: 3'- -GCGCuu--------CCG--UGAGCAGCUAGuAGCuG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 7694 | 0.69 | 0.573983 |
Target: 5'- uGUcGAGGCGCUCG-CGGgcggCGUCGAg -3' miRNA: 3'- gCGcUUCCGUGAGCaGCUa---GUAGCUg -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 8248 | 0.66 | 0.754222 |
Target: 5'- gGUGgcGGCAagcgccggUCGgcuGAUCAUCGACa -3' miRNA: 3'- gCGCuuCCGUg-------AGCag-CUAGUAGCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 12724 | 0.67 | 0.665216 |
Target: 5'- gCGCGgcGGCGCUCGcCGg----CGACc -3' miRNA: 3'- -GCGCuuCCGUGAGCaGCuaguaGCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 13613 | 0.66 | 0.764878 |
Target: 5'- gGCGAAGaucgaGCGCaUCGUCaucugGAUCAcguccUCGACg -3' miRNA: 3'- gCGCUUC-----CGUG-AGCAG-----CUAGU-----AGCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 14695 | 0.68 | 0.59668 |
Target: 5'- gCGCGGcaagcaAGGC-CgCGU-GAUCAUCGACg -3' miRNA: 3'- -GCGCU------UCCGuGaGCAgCUAGUAGCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 14766 | 0.66 | 0.762758 |
Target: 5'- cCGCGAuGGCGCUgcugaugUGgggCGGUCAgguucacaucauuUCGACg -3' miRNA: 3'- -GCGCUuCCGUGA-------GCa--GCUAGU-------------AGCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 16072 | 0.66 | 0.764878 |
Target: 5'- gGCGAAGaGUcgugucGCgaaGUCGAUCGcCGACg -3' miRNA: 3'- gCGCUUC-CG------UGag-CAGCUAGUaGCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 16692 | 0.76 | 0.224121 |
Target: 5'- cCGCGAcagaagugcagcAGGCGCUCGUaGA-CGUCGGCg -3' miRNA: 3'- -GCGCU------------UCCGUGAGCAgCUaGUAGCUG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 16760 | 0.68 | 0.65381 |
Target: 5'- gCGCGGAcGCGCgCGUCGA-CGUCGcCu -3' miRNA: 3'- -GCGCUUcCGUGaGCAGCUaGUAGCuG- -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 17105 | 0.66 | 0.764878 |
Target: 5'- aCGCGcAGGCGCUgGUCGcgCcgCu-- -3' miRNA: 3'- -GCGCuUCCGUGAgCAGCuaGuaGcug -5' |
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27632 | 3' | -52.9 | NC_005882.1 | + | 18205 | 0.67 | 0.665216 |
Target: 5'- uCGCGcAGGCGCUgGUgcUGGUCAcCGAg -3' miRNA: 3'- -GCGCuUCCGUGAgCA--GCUAGUaGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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