miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27632 3' -52.9 NC_005882.1 + 16760 0.68 0.65381
Target:  5'- gCGCGGAcGCGCgCGUCGA-CGUCGcCu -3'
miRNA:   3'- -GCGCUUcCGUGaGCAGCUaGUAGCuG- -5'
27632 3' -52.9 NC_005882.1 + 2444 0.68 0.642382
Target:  5'- gGCGAucGCGCUCa-CGGUCgAUCGGCu -3'
miRNA:   3'- gCGCUucCGUGAGcaGCUAG-UAGCUG- -5'
27632 3' -52.9 NC_005882.1 + 27553 0.68 0.619507
Target:  5'- gGCaucGGGCGCUCGUCGGcgGUCGcCg -3'
miRNA:   3'- gCGcu-UCCGUGAGCAGCUagUAGCuG- -5'
27632 3' -52.9 NC_005882.1 + 14695 0.68 0.59668
Target:  5'- gCGCGGcaagcaAGGC-CgCGU-GAUCAUCGACg -3'
miRNA:   3'- -GCGCU------UCCGuGaGCAgCUAGUAGCUG- -5'
27632 3' -52.9 NC_005882.1 + 28080 0.68 0.59668
Target:  5'- gGCGAuGGCGCUCGUUuuuggCAaCGGCg -3'
miRNA:   3'- gCGCUuCCGUGAGCAGcua--GUaGCUG- -5'
27632 3' -52.9 NC_005882.1 + 5639 0.69 0.573983
Target:  5'- aGCGAGcGGCACagGUUGcgcGUCAUgGACg -3'
miRNA:   3'- gCGCUU-CCGUGagCAGC---UAGUAgCUG- -5'
27632 3' -52.9 NC_005882.1 + 19475 0.69 0.573983
Target:  5'- gGCGAAuGCGCUgGUCGGcgCAUCGuCu -3'
miRNA:   3'- gCGCUUcCGUGAgCAGCUa-GUAGCuG- -5'
27632 3' -52.9 NC_005882.1 + 7694 0.69 0.573983
Target:  5'- uGUcGAGGCGCUCG-CGGgcggCGUCGAg -3'
miRNA:   3'- gCGcUUCCGUGAGCaGCUa---GUAGCUg -5'
27632 3' -52.9 NC_005882.1 + 25456 0.69 0.573983
Target:  5'- aCGCGAuGGCGCgggcCGUUGcgCAUcCGAUg -3'
miRNA:   3'- -GCGCUuCCGUGa---GCAGCuaGUA-GCUG- -5'
27632 3' -52.9 NC_005882.1 + 32585 0.69 0.551491
Target:  5'- gGCGAAGuugaGCUUGUCGAgggCAUCGGu -3'
miRNA:   3'- gCGCUUCcg--UGAGCAGCUa--GUAGCUg -5'
27632 3' -52.9 NC_005882.1 + 3873 0.7 0.529275
Target:  5'- uCGCGAucGGCAgcgcgugcgcUUCGUCGAUCA-CGAg -3'
miRNA:   3'- -GCGCUu-CCGU----------GAGCAGCUAGUaGCUg -5'
27632 3' -52.9 NC_005882.1 + 30843 0.7 0.529275
Target:  5'- cCGCGAAGGCG-UUGUUGAgggCGUgGAUg -3'
miRNA:   3'- -GCGCUUCCGUgAGCAGCUa--GUAgCUG- -5'
27632 3' -52.9 NC_005882.1 + 18702 0.7 0.507396
Target:  5'- -cCGGAGGCGCgcagagcgCGaUCGGcUCGUCGACa -3'
miRNA:   3'- gcGCUUCCGUGa-------GC-AGCU-AGUAGCUG- -5'
27632 3' -52.9 NC_005882.1 + 33595 0.7 0.507396
Target:  5'- gCGCGu-GGUACUUGUCGAgcuaCA-CGACg -3'
miRNA:   3'- -GCGCuuCCGUGAGCAGCUa---GUaGCUG- -5'
27632 3' -52.9 NC_005882.1 + 19255 0.7 0.496601
Target:  5'- -aCGAAGGCG-UCGUCGAguUCAgCGACu -3'
miRNA:   3'- gcGCUUCCGUgAGCAGCU--AGUaGCUG- -5'
27632 3' -52.9 NC_005882.1 + 21103 0.71 0.43824
Target:  5'- gCGCGAAGGCGCUCGgCGuugcCgaaacgaccgccgauGUCGGCg -3'
miRNA:   3'- -GCGCUUCCGUGAGCaGCua--G---------------UAGCUG- -5'
27632 3' -52.9 NC_005882.1 + 31605 0.72 0.424269
Target:  5'- aGCcGGGGCaACUCGgcUCGcUCGUCGACg -3'
miRNA:   3'- gCGcUUCCG-UGAGC--AGCuAGUAGCUG- -5'
27632 3' -52.9 NC_005882.1 + 23452 0.72 0.39525
Target:  5'- aGCGGccGCugUCGgCGAUgAUCGACg -3'
miRNA:   3'- gCGCUucCGugAGCaGCUAgUAGCUG- -5'
27632 3' -52.9 NC_005882.1 + 31782 0.76 0.230314
Target:  5'- aCGCcAAGaGCGCgcaccaGUCGAUCGUCGACg -3'
miRNA:   3'- -GCGcUUC-CGUGag----CAGCUAGUAGCUG- -5'
27632 3' -52.9 NC_005882.1 + 16692 0.76 0.224121
Target:  5'- cCGCGAcagaagugcagcAGGCGCUCGUaGA-CGUCGGCg -3'
miRNA:   3'- -GCGCU------------UCCGUGAGCAgCUaGUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.