Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27632 | 5' | -49.5 | NC_005882.1 | + | 34959 | 0.67 | 0.858342 |
Target: 5'- -gGCAAGCuacaUUCcgcCGAACGCGAaGCu -3' miRNA: 3'- gaCGUUCGc---AAGua-GCUUGCGCUaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 18554 | 0.67 | 0.858342 |
Target: 5'- gCUGCAaccugaAGCG---GUCGAGC-CGGUGCu -3' miRNA: 3'- -GACGU------UCGCaagUAGCUUGcGCUACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 30099 | 0.67 | 0.840074 |
Target: 5'- cCUGC-AGCccuUUCGUUGAcuuuuuCGCGGUGCc -3' miRNA: 3'- -GACGuUCGc--AAGUAGCUu-----GCGCUACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 13075 | 0.67 | 0.840074 |
Target: 5'- gCUGC-GGCGgcuggCGUCGA-CGUGGUGg -3' miRNA: 3'- -GACGuUCGCaa---GUAGCUuGCGCUACg -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 21254 | 0.67 | 0.840074 |
Target: 5'- -gGCAAcCGgcgCAUCGAACGgcuacgcgcuCGAUGCg -3' miRNA: 3'- gaCGUUcGCaa-GUAGCUUGC----------GCUACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 5742 | 0.67 | 0.840074 |
Target: 5'- cCUGCAuAGCGUUgAU-GAGCGuCGA-GCa -3' miRNA: 3'- -GACGU-UCGCAAgUAgCUUGC-GCUaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 26314 | 0.67 | 0.840074 |
Target: 5'- gCUGCAGaucGCacagaaGUUCAUCGcuuCGCGcgGCg -3' miRNA: 3'- -GACGUU---CG------CAAGUAGCuu-GCGCuaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 8060 | 0.67 | 0.840074 |
Target: 5'- -gGCAucGCGgcaaCGUCGAGCGCcAUGUa -3' miRNA: 3'- gaCGUu-CGCaa--GUAGCUUGCGcUACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 1636 | 0.68 | 0.820803 |
Target: 5'- -cGuCAAGUaaUCGUCGAGCuGCGcgGCg -3' miRNA: 3'- gaC-GUUCGcaAGUAGCUUG-CGCuaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 4522 | 0.68 | 0.820803 |
Target: 5'- -cGCAGGuCGaggUCGUCGAGgcUGCGcgGCc -3' miRNA: 3'- gaCGUUC-GCa--AGUAGCUU--GCGCuaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 34482 | 0.68 | 0.820803 |
Target: 5'- -aGCGGGcCGUcggcucggUCGUCGGAU-CGAUGCg -3' miRNA: 3'- gaCGUUC-GCA--------AGUAGCUUGcGCUACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 35961 | 0.68 | 0.810821 |
Target: 5'- gUGCGAGCGaUCG-CGAAUGcCGAUacGCc -3' miRNA: 3'- gACGUUCGCaAGUaGCUUGC-GCUA--CG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 13452 | 0.68 | 0.810821 |
Target: 5'- uUGUAAGUuUUCGaaUCuGAGCGCGAUcGCg -3' miRNA: 3'- gACGUUCGcAAGU--AG-CUUGCGCUA-CG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 27553 | 0.69 | 0.779635 |
Target: 5'- -gGCAucgGGCGcUCGUCGGcggucgccgcGCGCGcgGCc -3' miRNA: 3'- gaCGU---UCGCaAGUAGCU----------UGCGCuaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 2282 | 0.69 | 0.779635 |
Target: 5'- -cGCAucGCGUUCGaUGAACGCu-UGCa -3' miRNA: 3'- gaCGUu-CGCAAGUaGCUUGCGcuACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 29386 | 0.69 | 0.735668 |
Target: 5'- -cGCGAGCcgcgaUCGUCGccAGCGUGGUGUg -3' miRNA: 3'- gaCGUUCGca---AGUAGC--UUGCGCUACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 23224 | 0.7 | 0.724342 |
Target: 5'- -cGCAGGCGcUgGcCGGGCGCGGgccgGCg -3' miRNA: 3'- gaCGUUCGCaAgUaGCUUGCGCUa---CG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 33105 | 0.7 | 0.68979 |
Target: 5'- aCUGCGAauGCGg--GUCGGGCGCGGcgauaUGCu -3' miRNA: 3'- -GACGUU--CGCaagUAGCUUGCGCU-----ACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 10120 | 0.7 | 0.68979 |
Target: 5'- -aGCGGGCGUagAUUGGGCGgcgcuUGGUGCg -3' miRNA: 3'- gaCGUUCGCAagUAGCUUGC-----GCUACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 1442 | 0.7 | 0.688627 |
Target: 5'- uCUGCGAGCugGUUCgauucugGUCuGAGgGUGAUGCa -3' miRNA: 3'- -GACGUUCG--CAAG-------UAG-CUUgCGCUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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