miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27633 3' -62.5 NC_005882.1 + 14531 0.66 0.26356
Target:  5'- cGACGUaccaaacguccaUGCCgCGCugGCUgGCuGCgAGCa -3'
miRNA:   3'- aCUGCG------------GCGG-GCGugCGAgCG-CG-UCG- -5'
27633 3' -62.5 NC_005882.1 + 15402 0.66 0.26356
Target:  5'- cUGcUGCCGgaaCgGCACGUU-GCGCAGCu -3'
miRNA:   3'- -ACuGCGGCg--GgCGUGCGAgCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 34832 0.66 0.26356
Target:  5'- uUGGCGCCGCUguaCACGUUCGgaGCAacGCu -3'
miRNA:   3'- -ACUGCGGCGGgc-GUGCGAGCg-CGU--CG- -5'
27633 3' -62.5 NC_005882.1 + 13004 0.66 0.26356
Target:  5'- cGGCGCgGgCCgGCGCaacaGCUCcgGCgGCAGCa -3'
miRNA:   3'- aCUGCGgC-GGgCGUG----CGAG--CG-CGUCG- -5'
27633 3' -62.5 NC_005882.1 + 19586 0.66 0.262898
Target:  5'- cGAcCGCCGCCacagcgaGCAUGUgUCGUaugccgaGCAGCu -3'
miRNA:   3'- aCU-GCGGCGGg------CGUGCG-AGCG-------CGUCG- -5'
27633 3' -62.5 NC_005882.1 + 27010 0.66 0.262898
Target:  5'- gGGCGCgGCgcgcucgUCGUugGCcgCGCGCuGCu -3'
miRNA:   3'- aCUGCGgCG-------GGCGugCGa-GCGCGuCG- -5'
27633 3' -62.5 NC_005882.1 + 30112 0.66 0.262898
Target:  5'- gUGACGCCGuagaCCUGCAgcccuuuCGUugacuuuuUCGCGguGCc -3'
miRNA:   3'- -ACUGCGGC----GGGCGU-------GCG--------AGCGCguCG- -5'
27633 3' -62.5 NC_005882.1 + 16308 0.66 0.260922
Target:  5'- gUGAagaGCUGCCgGCACGCaaguuccuggugcCGCGCcaggaGGCg -3'
miRNA:   3'- -ACUg--CGGCGGgCGUGCGa------------GCGCG-----UCG- -5'
27633 3' -62.5 NC_005882.1 + 19227 0.66 0.259612
Target:  5'- cGACGUgacggagguaguacaCGCCCgGCACcgGgUUGUGCGGCg -3'
miRNA:   3'- aCUGCG---------------GCGGG-CGUG--CgAGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 12551 0.66 0.257007
Target:  5'- cGGCGCUGCggcgaucggCGCACuggcgGCUgGCGCGGUc -3'
miRNA:   3'- aCUGCGGCGg--------GCGUG-----CGAgCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 21214 0.66 0.257007
Target:  5'- aUGACGCCGagcagguugaCCgGCGCuuGCUCGCcgacauCGGCg -3'
miRNA:   3'- -ACUGCGGC----------GGgCGUG--CGAGCGc-----GUCG- -5'
27633 3' -62.5 NC_005882.1 + 10607 0.66 0.257007
Target:  5'- -cGCGCCGCucaCCGUagucgACGCUgucaCGCGuCGGCa -3'
miRNA:   3'- acUGCGGCG---GGCG-----UGCGA----GCGC-GUCG- -5'
27633 3' -62.5 NC_005882.1 + 11822 0.66 0.257007
Target:  5'- cGcCGCgGCCaUGCuuCGC-CGCGCGGUg -3'
miRNA:   3'- aCuGCGgCGG-GCGu-GCGaGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 10248 0.66 0.250587
Target:  5'- aUGACGCCGCCCaagaguGC-CGCgaacaaCGUGacuuuCAGCa -3'
miRNA:   3'- -ACUGCGGCGGG------CGuGCGa-----GCGC-----GUCG- -5'
27633 3' -62.5 NC_005882.1 + 11900 0.66 0.250587
Target:  5'- cGACGCCGa--GgACGaucacCGCGCGGCg -3'
miRNA:   3'- aCUGCGGCgggCgUGCga---GCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 3621 0.66 0.250587
Target:  5'- cGACGCCGCuuGCGuCGaucacgUCGCcgacCGGCu -3'
miRNA:   3'- aCUGCGGCGggCGU-GCg-----AGCGc---GUCG- -5'
27633 3' -62.5 NC_005882.1 + 14449 0.66 0.250587
Target:  5'- -aGCGuuGCUCGCA-GCcagccaGCGCGGCa -3'
miRNA:   3'- acUGCggCGGGCGUgCGag----CGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 22912 0.66 0.249953
Target:  5'- --gUGCCGCCCgagucguucuucaGCACGagauUCGCcGCGGCc -3'
miRNA:   3'- acuGCGGCGGG-------------CGUGCg---AGCG-CGUCG- -5'
27633 3' -62.5 NC_005882.1 + 4855 0.67 0.2468
Target:  5'- --uUGCCGCCUcgaucagcgagagcgGCGCGaguucgaCGCGCGGCg -3'
miRNA:   3'- acuGCGGCGGG---------------CGUGCga-----GCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 2416 0.67 0.244301
Target:  5'- uUGGCuUCGUCCGC-CaGCUCGCGaacgaGGCg -3'
miRNA:   3'- -ACUGcGGCGGGCGuG-CGAGCGCg----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.