miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27634 3' -58.4 NC_005882.1 + 24213 0.67 0.377793
Target:  5'- -uGGCGCacaaggCCGCGUGCGGGaagUCAGUc -3'
miRNA:   3'- cgUCGCG------GGCGCGCGUUCgcaAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 27230 0.67 0.377793
Target:  5'- aGCGcGCGCCCGagccagagcacCGCGCGccCGgcCAGCa -3'
miRNA:   3'- -CGU-CGCGGGC-----------GCGCGUucGCaaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 21475 0.67 0.37423
Target:  5'- uCGGCGCCgGUGCGCcguagucGGUGgucgugucguucgUCAGCu -3'
miRNA:   3'- cGUCGCGGgCGCGCGu------UCGCa------------AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 12424 0.67 0.368928
Target:  5'- cGCGGCuaCCCGCGCGUGAuucugcgcaCGUUCgAGCc -3'
miRNA:   3'- -CGUCGc-GGGCGCGCGUUc--------GCAAG-UCG- -5'
27634 3' -58.4 NC_005882.1 + 15055 0.67 0.368049
Target:  5'- gGCGGCGCauggcugUCGCGCGCGcugaucgagucGCGcaugUCGGCu -3'
miRNA:   3'- -CGUCGCG-------GGCGCGCGUu----------CGCa---AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 27618 0.67 0.366297
Target:  5'- cGCGGCGuCCCuGCaGCGCAucaacgcagcucggGGCGgaucgcCGGCu -3'
miRNA:   3'- -CGUCGC-GGG-CG-CGCGU--------------UCGCaa----GUCG- -5'
27634 3' -58.4 NC_005882.1 + 15412 0.67 0.351631
Target:  5'- gGCGGCGCCuuCGaCGCGCGGGgcaaCGGCc -3'
miRNA:   3'- -CGUCGCGG--GC-GCGCGUUCgcaaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 32130 0.67 0.351631
Target:  5'- cGUAcGUGCCUGCGCGaucguuGUGU-CGGCg -3'
miRNA:   3'- -CGU-CGCGGGCGCGCguu---CGCAaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 6398 0.67 0.350781
Target:  5'- cGUGGcCGgCCGCGCGCGcugccugGGCGa-CAGCc -3'
miRNA:   3'- -CGUC-GCgGGCGCGCGU-------UCGCaaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 12063 0.67 0.3432
Target:  5'- -gAGcCGCUgGCGCGCGGaCGccgUCAGCg -3'
miRNA:   3'- cgUC-GCGGgCGCGCGUUcGCa--AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 12951 0.68 0.334916
Target:  5'- uCGGCGCCgGCG-GCG-GCGUUCcacacGCg -3'
miRNA:   3'- cGUCGCGGgCGCgCGUuCGCAAGu----CG- -5'
27634 3' -58.4 NC_005882.1 + 2038 0.68 0.334916
Target:  5'- cGUA-CGUCCGCGUcuaCGAGCGcgUCGGCg -3'
miRNA:   3'- -CGUcGCGGGCGCGc--GUUCGCa-AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 25720 0.68 0.32678
Target:  5'- aCAGCGCCgauuaCGgGCGCGGcCGUggCAGCc -3'
miRNA:   3'- cGUCGCGG-----GCgCGCGUUcGCAa-GUCG- -5'
27634 3' -58.4 NC_005882.1 + 30046 0.68 0.32678
Target:  5'- aCGGCGa--GCGC-CGAGCGcUUCAGCu -3'
miRNA:   3'- cGUCGCgggCGCGcGUUCGC-AAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 8414 0.68 0.32678
Target:  5'- -aAGaGCauGCGCGCGAGCGgcgcaaucUCAGCg -3'
miRNA:   3'- cgUCgCGggCGCGCGUUCGCa-------AGUCG- -5'
27634 3' -58.4 NC_005882.1 + 23224 0.68 0.32678
Target:  5'- cGCAgGCGCuggCCGgGCGCGGGC---CGGCg -3'
miRNA:   3'- -CGU-CGCG---GGCgCGCGUUCGcaaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 14194 0.68 0.32678
Target:  5'- uGCAG-GCaCGCGCGgAAGCGgccgccgCGGCc -3'
miRNA:   3'- -CGUCgCGgGCGCGCgUUCGCaa-----GUCG- -5'
27634 3' -58.4 NC_005882.1 + 5477 0.68 0.318791
Target:  5'- uGCAuaCGCCaGCGUuucGCAAgcGCGUUCAGCu -3'
miRNA:   3'- -CGUc-GCGGgCGCG---CGUU--CGCAAGUCG- -5'
27634 3' -58.4 NC_005882.1 + 28605 0.68 0.318791
Target:  5'- cGCAGUauuGCUgGCGCGCAGGaugcCGGCc -3'
miRNA:   3'- -CGUCG---CGGgCGCGCGUUCgcaaGUCG- -5'
27634 3' -58.4 NC_005882.1 + 15674 0.68 0.314068
Target:  5'- cGCGGCacGCCCuugaugaccuguacgGCGCGCAGguccGCGagcacgUCGGCa -3'
miRNA:   3'- -CGUCG--CGGG---------------CGCGCGUU----CGCa-----AGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.